Non-Coding RNA Search

rhyp14c_k2.y1

Sequence:


               
               GTGAATTTTTTGTACATAAGTATTTGTTACAAATATTTTAGCAAATGCTTTCTATTTCTC
TTGCTTGTGCATATCTTGGCTGGCGTTACAGAAAATAGTGCAAACATTATTTCCTTACTG
GGTAATGAGGGCTTTTTCTTTTGTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTAGAGTG
TGTGGGAGGGTTGGGGGAGGGATGGATTATGTTGAATGTTTAGTTTTTCTTCTGCATGAA
ACATCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAATTTTTTGTACATAAGTATTTGTTACAAATATTTTAGCAAATGCTTTCTATTTCTC
TTGCTTGTGCATATCTTGGCTGGCGTTACAGAAAATAGTGCAAACATTATTTCCTTACTG
GGTAATGAGGGCTTTTTCTTTTGTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTAGAGTG
TGTGGGAGGGTTGGGGGAGGGATGGATTATGTTGAATGTTTAGTTTTTCTTCTGCATGAA
ACATCATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-107, + strand, RNAz p=0.683681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-107, + strand, RNAz p=0.683681

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000945, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000945, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-249, gnl|bosTau2|chr11 (48125885-48125654)
               

               
               1-249, gnl|canFam2|chr10 (70395896-70396194)
               

               
               1-249, gnl|dasNov1|scaffold_2966 (73263-72994)
               

               
               1-249, gnl|echTel1|scaffold_272386 (5004-4716)
               

               
               1-249, gnl|galGal2|chr3 (5943937-5943648)
               

               
               1-249, gnl|Hg17|chr2 (68317944-68317700)
               

               
               1-249, gnl|hg17|chr3 (116756381-116756639)
               

               
               1-249, gnl|loxAfr1|scaffold_16893 (18521-18230)
               

               
               1-249, gnl|Mm7|chr11 (17152093-17152324)
               

               
               1-249, gnl|mm7|chr16 (42169681-42169444)
               

               
               1-249, gnl|monDom2|scaffold_1 (34729699-34729978)
               

               
               1-249, gnl|oryCun1|scaffold_196447 (3604-3352)
               

               
               1-249, gnl|panTro1|chr2 (118487925-118488183)
               

               
               1-249, gnl|rheMac2|chr2 (35566618-35566878)
               

               
               1-249, gnl|rn3|chr11 (59977966-59978199)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-249, gnl|bosTau2|chr11 (48125885-48125654)
               

               
               1-249, gnl|canFam2|chr10 (70395896-70396194)
               

               
               1-249, gnl|dasNov1|scaffold_2966 (73263-72994)
               

               
               1-249, gnl|echTel1|scaffold_272386 (5004-4716)
               

               
               1-249, gnl|galGal2|chr3 (5943937-5943648)
               

               
               1-249, gnl|Hg17|chr2 (68317944-68317700)
               

               
               1-249, gnl|hg17|chr3 (116756381-116756639)
               

               
               1-249, gnl|loxAfr1|scaffold_16893 (18521-18230)
               

               
               1-249, gnl|Mm7|chr11 (17152093-17152324)
               

               
               1-249, gnl|mm7|chr16 (42169681-42169444)
               

               
               1-249, gnl|monDom2|scaffold_1 (34729699-34729978)
               

               
               1-249, gnl|oryCun1|scaffold_196447 (3604-3352)
               

               
               1-249, gnl|panTro1|chr2 (118487925-118488183)
               

               
               1-249, gnl|rheMac2|chr2 (35566618-35566878)
               

               
               1-249, gnl|rn3|chr11 (59977966-59978199)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-249, gnl\|bosTau2\|chr11 (48125885-48125654)
	1-249, gnl\|canFam2\|chr10 (70395896-70396194)
	1-249, gnl\|dasNov1\|scaffold_2966 (73263-72994)
	1-249, gnl\|echTel1\|scaffold_272386 (5004-4716)
	1-249, gnl\|galGal2\|chr3 (5943937-5943648)
	1-249, gnl\|Hg17\|chr2 (68317944-68317700)
	1-249, gnl\|hg17\|chr3 (116756381-116756639)
	1-249, gnl\|loxAfr1\|scaffold_16893 (18521-18230)
	1-249, gnl\|Mm7\|chr11 (17152093-17152324)
	1-249, gnl\|mm7\|chr16 (42169681-42169444)
	1-249, gnl\|monDom2\|scaffold_1 (34729699-34729978)
	1-249, gnl\|oryCun1\|scaffold_196447 (3604-3352)
	1-249, gnl\|panTro1\|chr2 (118487925-118488183)
	1-249, gnl\|rheMac2\|chr2 (35566618-35566878)
	1-249, gnl\|rn3\|chr11 (59977966-59978199)