Non-Coding RNA Search

rhyp17c_m20.y1

Sequence:


               
               TTGACAATAATAATACCTCCCTTGGAACTTTGTTGTAACGATTAAATAATGTAAATAAAG
AACTAGCAATAATGCCTAGCACTTGGTAAGTGCTCAACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACAATAATAATACCTCCCTTGGAACTTTGTTGTAACGATTAAATAATGTAAATAAAG
AACTAGCAATAATGCCTAGCACTTGGTAAGTGCTCAACAAAAAAAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-101, gnl|bosTau2|chr3 (7607770-7607869)
               

               
               1-101, gnl|canFam2|chr38 (24292023-24291904)
               

               
               1-101, gnl|dasNov1|scaffold_236371 (3667-3544)
               

               
               1-101, gnl|echTel1|scaffold_311345 (79943-79827)
               

               
               1-101, gnl|hg17|chr1 (157972587-157972710)
               

               
               1-101, gnl|Hg17|chr1 (157972687-157972588)
               

               
               1-101, gnl|Mm7|chr1 (171229941-171230036)
               

               
               1-101, gnl|oryCun1|scaffold_179946 (15226-15352)
               

               
               1-101, gnl|panTro1|chr1 (140040445-140040568)
               

               
               1-101, gnl|rheMac2|chr1 (139799747-139799870)
               

               
               1-101, gnl|rn3|chr13 (87340690-87340567)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-101, gnl|bosTau2|chr3 (7607770-7607869)
               

               
               1-101, gnl|canFam2|chr38 (24292023-24291904)
               

               
               1-101, gnl|dasNov1|scaffold_236371 (3667-3544)
               

               
               1-101, gnl|echTel1|scaffold_311345 (79943-79827)
               

               
               1-101, gnl|hg17|chr1 (157972587-157972710)
               

               
               1-101, gnl|Hg17|chr1 (157972687-157972588)
               

               
               1-101, gnl|Mm7|chr1 (171229941-171230036)
               

               
               1-101, gnl|oryCun1|scaffold_179946 (15226-15352)
               

               
               1-101, gnl|panTro1|chr1 (140040445-140040568)
               

               
               1-101, gnl|rheMac2|chr1 (139799747-139799870)
               

               
               1-101, gnl|rn3|chr13 (87340690-87340567)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-101, gnl\|bosTau2\|chr3 (7607770-7607869)
	1-101, gnl\|canFam2\|chr38 (24292023-24291904)
	1-101, gnl\|dasNov1\|scaffold_236371 (3667-3544)
	1-101, gnl\|echTel1\|scaffold_311345 (79943-79827)
	1-101, gnl\|hg17\|chr1 (157972587-157972710)
	1-101, gnl\|Hg17\|chr1 (157972687-157972588)
	1-101, gnl\|Mm7\|chr1 (171229941-171230036)
	1-101, gnl\|oryCun1\|scaffold_179946 (15226-15352)
	1-101, gnl\|panTro1\|chr1 (140040445-140040568)
	1-101, gnl\|rheMac2\|chr1 (139799747-139799870)
	1-101, gnl\|rn3\|chr13 (87340690-87340567)