Non-Coding RNA Search

rhyp18c_k8.y1

Sequence:


               
               GGCCATGTGCGCGGGGATGATGAAGCTGAGCCCAGCTTGTCCCCGAAGGAGGCCCTGGGG
GCTGAGAAGCAGGGCGGCAAAGTCCTGGAGCCGGTGGCCCTCAGCCCAGAGGCGAGTCCT
GCTGCCTGTCTGGAGGCTGGCCCGGTGCGGCCCCCAAGCCCCGTGGAGGAAGGAAGGGCC
ACCCTGGGGCCCAGGCTTCCCAGGGCTGCGGCCTCAGAGGCTGGGCTGGGTCCCGGCTCA
GAGTCTCCATCGAGGGCTGTGCCCAGGTTGGGAGGTGGCTGTCCCAAAGATCCTGCCCCA
ACACTTCCACTGCCCTCAAGGCAGCCAGAGCCCATGCTGGGCCGGGGCAGTGGAGGACAG
GCCCGGGCAGCACTCAGAGTCCTCAGCCCCTCCCCGCCGCAGCCCCCGGAAAGCCGCGCC
AGGCACCTGGCCAGTGCACCCCAAGACAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCATGTGCGCGGGGATGATGAAGCTGAGCCCAGCTTGTCCCCGAAGGAGGCCCTGGGG
GCTGAGAAGCAGGGCGGCAAAGTCCTGGAGCCGGTGGCCCTCAGCCCAGAGGCGAGTCCT
GCTGCCTGTCTGGAGGCTGGCCCGGTGCGGCCCCCAAGCCCCGTGGAGGAAGGAAGGGCC
ACCCTGGGGCCCAGGCTTCCCAGGGCTGCGGCCTCAGAGGCTGGGCTGGGTCCCGGCTCA
GAGTCTCCATCGAGGGCTGTGCCCAGGTTGGGAGGTGGCTGTCCCAAAGATCCTGCCCCA
ACACTTCCACTGCCCTCAAGGCAGCCAGAGCCCATGCTGGGCCGGGGCAGTGGAGGACAG
GCCCGGGCAGCACTCAGAGTCCTCAGCCCCTCCCCGCCGCAGCCCCCGGAAAGCCGCGCC
AGGCACCTGGCCAGTGCACCCCAAGACAGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               13-104, - strand, RNAz p=0.796642
               

               
               238-357, - strand, RNAz p=0.890744

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-104, - strand, RNAz p=0.796642
               

               
               238-357, - strand, RNAz p=0.890744

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               336-479, - strand, RNAmicro p=0.998301
               

               
               257-340, + strand, RNAmicro p=0.956131

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               336-479, - strand, RNAmicro p=0.998301
               

               
               257-340, + strand, RNAmicro p=0.956131

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-451, gnl|bosTau2|chr4 (43256965-43256527)
               

               
               13-451, gnl|Hg17|chr7 (44895841-44895349)
               

               
               13-451, gnl|Mm7|chr11 (6552219-6551773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-451, gnl|bosTau2|chr4 (43256965-43256527)
               

               
               13-451, gnl|Hg17|chr7 (44895841-44895349)
               

               
               13-451, gnl|Mm7|chr11 (6552219-6551773)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	13-104, - strand, RNAz p=0.796642
	238-357, - strand, RNAz p=0.890744

	336-479, - strand, RNAmicro p=0.998301
	257-340, + strand, RNAmicro p=0.956131

	13-451, gnl\|bosTau2\|chr4 (43256965-43256527)
	13-451, gnl\|Hg17\|chr7 (44895841-44895349)
	13-451, gnl\|Mm7\|chr11 (6552219-6551773)