Non-Coding RNA Search

rhyp20c_e19.y1

Sequence:


               
               CAATTCCAATACTTCTGCTTTCTTTGATTCTATTTTTATGTGTATTTATCTCTCTTCAGA
CTCTTAGCCCAGAAGGAGGTTCTCCTGATAAAACAACAGCTGGATCCAAATTGTGCTTCT
CCCCAGACTCTATATCACTCCCTGGGGGAGGAGTGGAGGGGTGTACAAGGAGACAAATAA
GAAGCTCCCTTTTCTTTACTTCCAGGGACCCCAATATCCTAAAGTTAGGGTGATTAGAAC
AAAGTGAAGAAAATGCAGGTATATTGGAAGAGGCAGAGCACAGGGCAATAGGAGGGGGAC
CCTGGAGACGGACTGGCTTGGGGCTGCCCCAGGTCTGGGAGCTGGGGGTAATCCAGTCCC
ACCTTAGGTCCCCTGCCTGCCTGACTTTGGATGCTGGGTATTGGAACTGGATGCAAAGTA
CAATGTGTTTTTCTCCAGTGCTGTCCATGCTTCTCATCTTGTGAAACGGCCAGGGTCCTC
TCCTTTGAACCTTGCTCCCATAGGAGCCACCCTTTTCTTTCCTGGTTTTCTGAAGACTCC
TCTTTCCTACCCTCTCACACTGTAAAGTACCATTTACCATTTTTTCATTCACTTCTCTTA
AACTTGTGAATGCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTCCAATACTTCTGCTTTCTTTGATTCTATTTTTATGTGTATTTATCTCTCTTCAGA
CTCTTAGCCCAGAAGGAGGTTCTCCTGATAAAACAACAGCTGGATCCAAATTGTGCTTCT
CCCCAGACTCTATATCACTCCCTGGGGGAGGAGTGGAGGGGTGTACAAGGAGACAAATAA
GAAGCTCCCTTTTCTTTACTTCCAGGGACCCCAATATCCTAAAGTTAGGGTGATTAGAAC
AAAGTGAAGAAAATGCAGGTATATTGGAAGAGGCAGAGCACAGGGCAATAGGAGGGGGAC
CCTGGAGACGGACTGGCTTGGGGCTGCCCCAGGTCTGGGAGCTGGGGGTAATCCAGTCCC
ACCTTAGGTCCCCTGCCTGCCTGACTTTGGATGCTGGGTATTGGAACTGGATGCAAAGTA
CAATGTGTTTTTCTCCAGTGCTGTCCATGCTTCTCATCTTGTGAAACGGCCAGGGTCCTC
TCCTTTGAACCTTGCTCCCATAGGAGCCACCCTTTTCTTTCCTGGTTTTCTGAAGACTCC
TCTTTCCTACCCTCTCACACTGTAAAGTACCATTTACCATTTTTTCATTCACTTCTCTTA
AACTTGTGAATGCTTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-380, - strand, RNAz p=0.999959
               

               
               459-571, - strand, RNAz p=0.818986

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-380, - strand, RNAz p=0.999959
               

               
               459-571, - strand, RNAz p=0.818986

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               139-225, + strand, RNAmicro p=1
               

               
               314-390, + strand, RNAmicro p=0.998404
               

               
               142-245, - strand, RNAmicro p=0.978321

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               139-225, + strand, RNAmicro p=1
               

               
               314-390, + strand, RNAmicro p=0.998404
               

               
               142-245, - strand, RNAmicro p=0.978321

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-617, gnl|bosTau2|chr24 (26216426-26217039)
               

               
               1-617, gnl|Hg17|chr18 (900255-900876)
               

               
               1-617, gnl|Mm7|chr17 (91631075-91631682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-617, gnl|bosTau2|chr24 (26216426-26217039)
               

               
               1-617, gnl|Hg17|chr18 (900255-900876)
               

               
               1-617, gnl|Mm7|chr17 (91631075-91631682)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	120-380, - strand, RNAz p=0.999959
	459-571, - strand, RNAz p=0.818986

	139-225, + strand, RNAmicro p=1
	314-390, + strand, RNAmicro p=0.998404
	142-245, - strand, RNAmicro p=0.978321

	1-617, gnl\|bosTau2\|chr24 (26216426-26217039)
	1-617, gnl\|Hg17\|chr18 (900255-900876)
	1-617, gnl\|Mm7\|chr17 (91631075-91631682)