Non-Coding RNA Search

rhyp25c_h24.y1

Sequence:


               
               CTGGTCTGCTGTGCCTCTTCATTGCCAGCAACCGTGTCTTCACTGAGGGCACCTGTAAGC
TGTTGACTTTGGTGGTCACTGACCTGGTGGATGAGTGACCTGGTGTTAAACCACCGTAAG
CAGGCGGCCTCAGCGCTTCTCTTTGGCATGGTGGCTCTGGTGACCAAGCCAGGCCAGACC
TTCGCCCCACTGCTGGGTACCTGGCTGCTGTGCTTCTACACAGGTCACGATCTCTTCCAG
CAGCCTCCACTCACCCCTGTGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCTGCTGTGCCTCTTCATTGCCAGCAACCGTGTCTTCACTGAGGGCACCTGTAAGC
TGTTGACTTTGGTGGTCACTGACCTGGTGGATGAGTGACCTGGTGTTAAACCACCGTAAG
CAGGCGGCCTCAGCGCTTCTCTTTGGCATGGTGGCTCTGGTGACCAAGCCAGGCCAGACC
TTCGCCCCACTGCTGGGTACCTGGCTGCTGTGCTTCTACACAGGTCACGATCTCTTCCAG
CAGCCTCCACTCACCCCTGTGGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-225, - strand, RNAz p=0.606684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-225, - strand, RNAz p=0.606684

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               49-165, - strand, RNAmicro p=0.999352
               

               
               34-159, + strand, RNAmicro p=0.938225

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               49-165, - strand, RNAmicro p=0.999352
               

               
               34-159, + strand, RNAmicro p=0.938225

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               14-225, gnl|bosTau2|chr26 (14064844-14064633)
               

               
               14-225, gnl|canFam2|chr28 (17969202-17969416)
               

               
               14-225, gnl|danRer3|chrNA (117255508-117255720)
               

               
               14-225, gnl|echTel1|scaffold_316526 (208457-208672)
               

               
               14-225, gnl|fr1|chrUn (50054832-50054619)
               

               
               14-225, gnl|galGal2|chr6 (22235190-22235393)
               

               
               14-225, gnl|hg17|chr10 (104223549-104223764)
               

               
               14-225, gnl|Hg17|chr10 (104223548-104223761)
               

               
               14-225, gnl|loxAfr1|scaffold_22431 (15728-15513)
               

               
               14-225, gnl|mm7|chr19 (46268802-46269014)
               

               
               14-225, gnl|Mm7|chr19 (46268797-46269011)
               

               
               14-225, gnl|monDom2|scaffold_14 (60871431-60871199)
               

               
               14-225, gnl|oryCun1|scaffold_210750 (54814-55026)
               

               
               14-225, gnl|panTro1|chr8 (105984352-105984567)
               

               
               14-225, gnl|rheMac2|chr9 (102131105-102131320)
               

               
               14-225, gnl|rn3|chr1 (251851041-251851255)
               

               
               14-225, gnl|tetNig1|chr2 (885742-885527)
               

               
               14-225, gnl|xenTro1|scaffold_87 (428293-428508)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-225, gnl|bosTau2|chr26 (14064844-14064633)
               

               
               14-225, gnl|canFam2|chr28 (17969202-17969416)
               

               
               14-225, gnl|danRer3|chrNA (117255508-117255720)
               

               
               14-225, gnl|echTel1|scaffold_316526 (208457-208672)
               

               
               14-225, gnl|fr1|chrUn (50054832-50054619)
               

               
               14-225, gnl|galGal2|chr6 (22235190-22235393)
               

               
               14-225, gnl|hg17|chr10 (104223549-104223764)
               

               
               14-225, gnl|Hg17|chr10 (104223548-104223761)
               

               
               14-225, gnl|loxAfr1|scaffold_22431 (15728-15513)
               

               
               14-225, gnl|mm7|chr19 (46268802-46269014)
               

               
               14-225, gnl|Mm7|chr19 (46268797-46269011)
               

               
               14-225, gnl|monDom2|scaffold_14 (60871431-60871199)
               

               
               14-225, gnl|oryCun1|scaffold_210750 (54814-55026)
               

               
               14-225, gnl|panTro1|chr8 (105984352-105984567)
               

               
               14-225, gnl|rheMac2|chr9 (102131105-102131320)
               

               
               14-225, gnl|rn3|chr1 (251851041-251851255)
               

               
               14-225, gnl|tetNig1|chr2 (885742-885527)
               

               
               14-225, gnl|xenTro1|scaffold_87 (428293-428508)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	49-165, - strand, RNAmicro p=0.999352
	34-159, + strand, RNAmicro p=0.938225

	14-225, gnl\|bosTau2\|chr26 (14064844-14064633)
	14-225, gnl\|canFam2\|chr28 (17969202-17969416)
	14-225, gnl\|danRer3\|chrNA (117255508-117255720)
	14-225, gnl\|echTel1\|scaffold_316526 (208457-208672)
	14-225, gnl\|fr1\|chrUn (50054832-50054619)
	14-225, gnl\|galGal2\|chr6 (22235190-22235393)
	14-225, gnl\|hg17\|chr10 (104223549-104223764)
	14-225, gnl\|Hg17\|chr10 (104223548-104223761)
	14-225, gnl\|loxAfr1\|scaffold_22431 (15728-15513)
	14-225, gnl\|mm7\|chr19 (46268802-46269014)
	14-225, gnl\|Mm7\|chr19 (46268797-46269011)
	14-225, gnl\|monDom2\|scaffold_14 (60871431-60871199)
	14-225, gnl\|oryCun1\|scaffold_210750 (54814-55026)
	14-225, gnl\|panTro1\|chr8 (105984352-105984567)
	14-225, gnl\|rheMac2\|chr9 (102131105-102131320)
	14-225, gnl\|rn3\|chr1 (251851041-251851255)
	14-225, gnl\|tetNig1\|chr2 (885742-885527)
	14-225, gnl\|xenTro1\|scaffold_87 (428293-428508)