Non-Coding RNA Search

rhyp26c_e10.y1

Sequence:


               
               CCCAATTGTTCTCAAAGCATGTTCCCTGGATCAGCAGCATCAGGATCCTGCAGCAGTTTG
CTGGAAATGCAACTTTTCTGCCCAAAGCTGGACCTAGAGAATCAGAAGGTCTGAGGCGGG
AGCCCGGCCATCTGAGTTTTAACAGTTGACTCAGATGCAGTTCAAGTTTGAGAACCGCTG
GTCTAAGGTAGTGGGAGAGTTTTGATGGAGATAAGATGCTAAAACCAGGGAGTTCCTATT
GTGGCTCAGATtagtatctatgaggatgcgggttcggtccctggccttgcttggtgggtt
aaaggatccggcgctgccgcgggctgtggtgtgggtcgcggacgcggctcggatctggtg
ttgctgtggctgtggcgtgggctggcgggtacagctccaattcaacccctagcctgggaa
cttccatatgTGCAGGTGCGACTGGACGAAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAATTGTTCTCAAAGCATGTTCCCTGGATCAGCAGCATCAGGATCCTGCAGCAGTTTG
CTGGAAATGCAACTTTTCTGCCCAAAGCTGGACCTAGAGAATCAGAAGGTCTGAGGCGGG
AGCCCGGCCATCTGAGTTTTAACAGTTGACTCAGATGCAGTTCAAGTTTGAGAACCGCTG
GTCTAAGGTAGTGGGAGAGTTTTGATGGAGATAAGATGCTAAAACCAGGGAGTTCCTATT
GTGGCTCAGATtagtatctatgaggatgcgggttcggtccctggccttgcttggtgggtt
aaaggatccggcgctgccgcgggctgtggtgtgggtcgcggacgcggctcggatctggtg
ttgctgtggctgtggcgtgggctggcgggtacagctccaattcaacccctagcctgggaa
cttccatatgTGCAGGTGCGACTGGACGAAGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-228, - strand, RNAz p=0.998275
               

               
               120-218, + strand, RNAz p=0.519016

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-228, - strand, RNAz p=0.998275
               

               
               120-218, + strand, RNAz p=0.519016

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-228, gnl|bosTau2|chrX (41191676-41191450)
               

               
               1-228, gnl|canFam2|chrX (6882267-6882624)
               

               
               1-228, gnl|hg17|chrX (10021726-10022078)
               

               
               1-228, gnl|Hg17|chrX (10021921-10022169)
               

               
               1-228, gnl|loxAfr1|scaffold_26671 (4721-4366)
               

               
               1-228, gnl|panTro1|chrX (10330694-10331046)
               

               
               1-228, gnl|rheMac2|chrX (7874345-7874702)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chrX (41191676-41191450)
               

               
               1-228, gnl|canFam2|chrX (6882267-6882624)
               

               
               1-228, gnl|hg17|chrX (10021726-10022078)
               

               
               1-228, gnl|Hg17|chrX (10021921-10022169)
               

               
               1-228, gnl|loxAfr1|scaffold_26671 (4721-4366)
               

               
               1-228, gnl|panTro1|chrX (10330694-10331046)
               

               
               1-228, gnl|rheMac2|chrX (7874345-7874702)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	77-228, - strand, RNAz p=0.998275
	120-218, + strand, RNAz p=0.519016

	1-228, gnl\|bosTau2\|chrX (41191676-41191450)
	1-228, gnl\|canFam2\|chrX (6882267-6882624)
	1-228, gnl\|hg17\|chrX (10021726-10022078)
	1-228, gnl\|Hg17\|chrX (10021921-10022169)
	1-228, gnl\|loxAfr1\|scaffold_26671 (4721-4366)
	1-228, gnl\|panTro1\|chrX (10330694-10331046)
	1-228, gnl\|rheMac2\|chrX (7874345-7874702)