Non-Coding RNA Search

rhyp26c_i2.y1

Sequence:


               
               CCGCCTGCCTTCGGCAAGCTACTCAAAGACTTGGAGGCTACGCATAGGAAGGAAAGCAGA
CTATATTCAGATCCAGCACCTTCTGTTTTTCTCATTTGCCTGGAGGAAGGTTAGGCTCTG
AATCTGAAGTGCTCTGGCCTGGGAGGCTCACAGAGACTAAACAGAACACCCTCGCCACAA
CAACAAAAGAAAACCAGCCCCCACACCGCACGCTTGGAGAAGGACACCGGGCCACCACTT
GTGATCACCCCAAAGACCCAGTGTCTGGACGCGGGTGGTGGCTCCCACCCTGGGTGGCCT
CCAGAGGCACAGGGTCCACCACCCACAAAGGAGGTCAACTTCTAGACACGGTCCAAGGAG
CTCCTGGGTACACCTGTGGCAGAGACAGAATGGCTACCTTCTCACAGCTTCCCCAGTGCC
TGCTCAGCACTTCTTCCATCTTAGGGACACCGTGGGGACAATGCAGGGAGGGGAGGGCTG
GGACTCCCTCCTGTTTGTAAGGAGGGTGATGGGGGAGCCAAAGCAGGGGCTGCTTTTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCTGCCTTCGGCAAGCTACTCAAAGACTTGGAGGCTACGCATAGGAAGGAAAGCAGA
CTATATTCAGATCCAGCACCTTCTGTTTTTCTCATTTGCCTGGAGGAAGGTTAGGCTCTG
AATCTGAAGTGCTCTGGCCTGGGAGGCTCACAGAGACTAAACAGAACACCCTCGCCACAA
CAACAAAAGAAAACCAGCCCCCACACCGCACGCTTGGAGAAGGACACCGGGCCACCACTT
GTGATCACCCCAAAGACCCAGTGTCTGGACGCGGGTGGTGGCTCCCACCCTGGGTGGCCT
CCAGAGGCACAGGGTCCACCACCCACAAAGGAGGTCAACTTCTAGACACGGTCCAAGGAG
CTCCTGGGTACACCTGTGGCAGAGACAGAATGGCTACCTTCTCACAGCTTCCCCAGTGCC
TGCTCAGCACTTCTTCCATCTTAGGGACACCGTGGGGACAATGCAGGGAGGGGAGGGCTG
GGACTCCCTCCTGTTTGTAAGGAGGGTGATGGGGGAGCCAAAGCAGGGGCTGCTTTTACC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               106-202, - strand, RNAz p=0.896963
               

               
               234-345, - strand, RNAz p=0.969495
               

               
               413-524, - strand, RNAz p=0.670291
               

               
               416-532, + strand, RNAz p=0.806013

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-202, - strand, RNAz p=0.896963
               

               
               234-345, - strand, RNAz p=0.969495
               

               
               413-524, - strand, RNAz p=0.670291
               

               
               416-532, + strand, RNAz p=0.806013

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-532, gnl|bosTau2|chr16 (22153459-22152907)
               

               
               3-532, gnl|canFam2|chr2 (87799796-87799281)
               

               
               3-532, gnl|dasNov1|scaffold_5066 (44632-45207)
               

               
               3-532, gnl|echTel1|scaffold_318606 (86217-85660)
               

               
               3-532, gnl|hg17|chr1 (11132400-11132972)
               

               
               3-532, gnl|Hg17|chr1 (11132465-11133018)
               

               
               3-532, gnl|mm7|chr4 (147521189-147520846)
               

               
               3-532, gnl|monDom2|scaffold_175 (1081818-1081227)
               

               
               3-532, gnl|oryCun1|scaffold_201999 (50638-51178)
               

               
               3-532, gnl|panTro1|chr1_random (4154549-4155121)
               

               
               3-532, gnl|rheMac2|chr1 (14246770-14247338)
               

               
               3-532, gnl|rn3|chr5 (165623371-165623038)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-532, gnl|bosTau2|chr16 (22153459-22152907)
               

               
               3-532, gnl|canFam2|chr2 (87799796-87799281)
               

               
               3-532, gnl|dasNov1|scaffold_5066 (44632-45207)
               

               
               3-532, gnl|echTel1|scaffold_318606 (86217-85660)
               

               
               3-532, gnl|hg17|chr1 (11132400-11132972)
               

               
               3-532, gnl|Hg17|chr1 (11132465-11133018)
               

               
               3-532, gnl|mm7|chr4 (147521189-147520846)
               

               
               3-532, gnl|monDom2|scaffold_175 (1081818-1081227)
               

               
               3-532, gnl|oryCun1|scaffold_201999 (50638-51178)
               

               
               3-532, gnl|panTro1|chr1_random (4154549-4155121)
               

               
               3-532, gnl|rheMac2|chr1 (14246770-14247338)
               

               
               3-532, gnl|rn3|chr5 (165623371-165623038)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	106-202, - strand, RNAz p=0.896963
	234-345, - strand, RNAz p=0.969495
	413-524, - strand, RNAz p=0.670291
	416-532, + strand, RNAz p=0.806013

	3-532, gnl\|bosTau2\|chr16 (22153459-22152907)
	3-532, gnl\|canFam2\|chr2 (87799796-87799281)
	3-532, gnl\|dasNov1\|scaffold_5066 (44632-45207)
	3-532, gnl\|echTel1\|scaffold_318606 (86217-85660)
	3-532, gnl\|hg17\|chr1 (11132400-11132972)
	3-532, gnl\|Hg17\|chr1 (11132465-11133018)
	3-532, gnl\|mm7\|chr4 (147521189-147520846)
	3-532, gnl\|monDom2\|scaffold_175 (1081818-1081227)
	3-532, gnl\|oryCun1\|scaffold_201999 (50638-51178)
	3-532, gnl\|panTro1\|chr1_random (4154549-4155121)
	3-532, gnl\|rheMac2\|chr1 (14246770-14247338)
	3-532, gnl\|rn3\|chr5 (165623371-165623038)