Non-Coding RNA Search

rhyp28c_k3.y1

Sequence:


               
               CCTACACTTTCCCCTAAAAGAAGCCAAGTTCTTCAAAAAGTTACCGTCACAAAGACCCCC
CCCCTCTGTCTCTCTGCCCCCCCCCTTCACTCTCCATTCTTCCTTTCTTTCTGACTCTTC
CCTTGCCCTCCACTCTCCCTCCTATGCCCAGGGCTCCTATAAAGAGATCAGTTTCCCATA
GTCAAGAAATTCGTGTAGACATATCAATCAATATTCTGACTAAAACTTAAGCCAAAAGGA
ACCTCTTATAAGGTCTTGTTTTCCTTTGGAGAATAAGACAATATAAGATGTACTAAATTA
AAAAAAAAATCAGAGCAAGCTACCCCCTCCTGTTTCAGCTTGCCTCTGATGGAAACTGAA
TTAAGATTTTTAGGAACCTGGACCTTTGAGAACAGGACACTAACAGGTGGTGATCACAGA
GGCTAGGTACAAAGGTCTTGAAGCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTACACTTTCCCCTAAAAGAAGCCAAGTTCTTCAAAAAGTTACCGTCACAAAGACCCCC
CCCCTCTGTCTCTCTGCCCCCCCCCTTCACTCTCCATTCTTCCTTTCTTTCTGACTCTTC
CCTTGCCCTCCACTCTCCCTCCTATGCCCAGGGCTCCTATAAAGAGATCAGTTTCCCATA
GTCAAGAAATTCGTGTAGACATATCAATCAATATTCTGACTAAAACTTAAGCCAAAAGGA
ACCTCTTATAAGGTCTTGTTTTCCTTTGGAGAATAAGACAATATAAGATGTACTAAATTA
AAAAAAAAATCAGAGCAAGCTACCCCCTCCTGTTTCAGCTTGCCTCTGATGGAAACTGAA
TTAAGATTTTTAGGAACCTGGACCTTTGAGAACAGGACACTAACAGGTGGTGATCACAGA
GGCTAGGTACAAAGGTCTTGAAGCTTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-357, - strand, RNAz p=0.995998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-357, - strand, RNAz p=0.995998

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               213-290, 697306 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB445918.1|), 
blast E-value=3e-18, identity=91.03% 
               

               
               213-299, AGENCOURT_14372153 NIH_MGC_179 Homo sapiens cDNA clone 
(gb|CD513674.1|), blast E-value=0.00000000000004, identity=87.36% 
               

               
               213-290, BE04011B2B10 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437153.1|), blast E-value=1e-20, identity=92.31% 
               

               
               213-290, 783133 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735563.1|), 
blast E-value=1e-20, identity=92.31% 
               

               
               213-290, LB01624.CR_F14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814436.1|), 
blast E-value=1e-20, identity=92.31% 
               

               
               213-290, LB02533.CR.1_C12 GC_BGC-25 Bos taurus cDNA clone IMAGE 
(gb|EE340351.1|), blast E-value=1e-20, identity=92.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               213-290, 697306 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB445918.1|), 
blast E-value=3e-18, identity=91.03% 
               

               
               213-299, AGENCOURT_14372153 NIH_MGC_179 Homo sapiens cDNA clone 
(gb|CD513674.1|), blast E-value=0.00000000000004, identity=87.36% 
               

               
               213-290, BE04011B2B10 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437153.1|), blast E-value=1e-20, identity=92.31% 
               

               
               213-290, 783133 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735563.1|), 
blast E-value=1e-20, identity=92.31% 
               

               
               213-290, LB01624.CR_F14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814436.1|), 
blast E-value=1e-20, identity=92.31% 
               

               
               213-290, LB02533.CR.1_C12 GC_BGC-25 Bos taurus cDNA clone IMAGE 
(gb|EE340351.1|), blast E-value=1e-20, identity=92.31%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-448, gnl|bosTau2|chrX (18298568-18298117)
               

               
               1-448, gnl|Hg17|chrX (107771090-107770634)
               

               
               1-448, gnl|Mm7|chrX (136377100-136376637)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-448, gnl|bosTau2|chrX (18298568-18298117)
               

               
               1-448, gnl|Hg17|chrX (107771090-107770634)
               

               
               1-448, gnl|Mm7|chrX (136377100-136376637)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	213-290, 697306 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB445918.1\|), blast E-value=3e-18, identity=91.03%
	213-299, AGENCOURT_14372153 NIH_MGC_179 Homo sapiens cDNA clone (gb\|CD513674.1\|), blast E-value=0.00000000000004, identity=87.36%
	213-290, BE04011B2B10 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN437153.1\|), blast E-value=1e-20, identity=92.31%
	213-290, 783133 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX735563.1\|), blast E-value=1e-20, identity=92.31%
	213-290, LB01624.CR_F14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT814436.1\|), blast E-value=1e-20, identity=92.31%
	213-290, LB02533.CR.1_C12 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE340351.1\|), blast E-value=1e-20, identity=92.31%

	1-448, gnl\|bosTau2\|chrX (18298568-18298117)
	1-448, gnl\|Hg17\|chrX (107771090-107770634)
	1-448, gnl\|Mm7\|chrX (136377100-136376637)