Non-Coding RNA Search

rhyp32c_i21.y1

Sequence:


               
               ATTGCACGAGGGGTGTTCAGTGGCCTGAATTATTCGGCCATCATTGAAAATGCAGTCAGC
GCTAATGAAGGGTCTGGTCCTCATACCTGAATTTGTCAACATGTCTGTCTCTCAGCAAAT
GGCAGGTTCATCAGAAGCCCATGCAGGGTGTGAGCGGTGGTGAAAAGTTGAGGGTTTCTT
TCTCTCATGTGCCTGGGTCGCTAGGACCCCTAGCAGCATCACTATGCATGAGCAGACCGC
TTCTGTGTTGTAGTTTGAATACCAGGTGGACCTTGGATGGGCTGGCCTGAAAAGAGGAGA
GCCATTCTTCCACTAGGTCATTGCCTCACCCATCAGCCAGATTCAGGAGAGATGGAAAGC
AGTGCGGAGTTTGGGGACAGCCAGCTGCTTCCCAAACTTTCCAGGGACAGCAGCACAGCA
GCCAACACAAATGTCAGTGGGATTGGCCAGCATGCCAGATGCCGTCACAGAAAATAACTT
CCCCTGTCTGGCATCTGGGTACTTGCCTTGTCATCCAGGAACCCTCACGCTGGTCTTCTG
GTCGAGCTGGGACCGTGAGGCCCTCTGCCCTTTCTTTCTCTCTGTCCAGCGAGTGTTTGG
ATGGATCACTGAGAGCAGGATAGACTTCAGCTGTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCACGAGGGGTGTTCAGTGGCCTGAATTATTCGGCCATCATTGAAAATGCAGTCAGC
GCTAATGAAGGGTCTGGTCCTCATACCTGAATTTGTCAACATGTCTGTCTCTCAGCAAAT
GGCAGGTTCATCAGAAGCCCATGCAGGGTGTGAGCGGTGGTGAAAAGTTGAGGGTTTCTT
TCTCTCATGTGCCTGGGTCGCTAGGACCCCTAGCAGCATCACTATGCATGAGCAGACCGC
TTCTGTGTTGTAGTTTGAATACCAGGTGGACCTTGGATGGGCTGGCCTGAAAAGAGGAGA
GCCATTCTTCCACTAGGTCATTGCCTCACCCATCAGCCAGATTCAGGAGAGATGGAAAGC
AGTGCGGAGTTTGGGGACAGCCAGCTGCTTCCCAAACTTTCCAGGGACAGCAGCACAGCA
GCCAACACAAATGTCAGTGGGATTGGCCAGCATGCCAGATGCCGTCACAGAAAATAACTT
CCCCTGTCTGGCATCTGGGTACTTGCCTTGTCATCCAGGAACCCTCACGCTGGTCTTCTG
GTCGAGCTGGGACCGTGAGGCCCTCTGCCCTTTCTTTCTCTCTGTCCAGCGAGTGTTTGG
ATGGATCACTGAGAGCAGGATAGACTTCAGCTGTGCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               383-536, - strand, RNAz p=0.96866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-536, - strand, RNAz p=0.96866

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               241-639, gnl|bosTau2|chr25 (5650924-5651318)
               

               
               241-639, gnl|Hg17|chr16 (7226940-7227357)
               

               
               241-639, gnl|Mm7|chr16 (6651632-6651962)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-639, gnl|bosTau2|chr25 (5650924-5651318)
               

               
               241-639, gnl|Hg17|chr16 (7226940-7227357)
               

               
               241-639, gnl|Mm7|chr16 (6651632-6651962)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	241-639, gnl\|bosTau2\|chr25 (5650924-5651318)
	241-639, gnl\|Hg17\|chr16 (7226940-7227357)
	241-639, gnl\|Mm7\|chr16 (6651632-6651962)