Non-Coding RNA Search

rill301b_h22.y1

Sequence:


               
               TGCCACTGCACGGGGAGCCTCCATTTCGTGCACCAGGCCTGCCTGCAGCAGTGGATCAAG
AGCTCCGACACGCGCTGCTGTGAGCTGTGCAAGTTCGAGTTCATCATGGAGACCAAGCAG
AAGCCTCTGAGAAAGTGGGAGATGCTGCAGATGACAGCCAGAGAGCGCCGGAGGATCATG
TGCTCAGTGACGTTCCATGTCATCGCCATCACCTGTGTGGTCTGGTCCTTGTATGTGCTC
ATCGATCGCACTGCTGAGGAGATCAAGCAGGGGCAGGCAACAGGTACGTCCTGAAGGAAA
GGCGCACCCAGCACGGAGACCCCGAGGAGTGCACTGGGGCATTACTCCATATTGATTCTG
AAGTCAGACCTCAAGTGTCTAGGCTTCTGGAGGGAGGTGTCTGTTGTGAGGCACCACACA
TCCCTTTTGGATGTTTCTTTTAAGTAGTTCTTAAAACCCAGTCGAGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCACTGCACGGGGAGCCTCCATTTCGTGCACCAGGCCTGCCTGCAGCAGTGGATCAAG
AGCTCCGACACGCGCTGCTGTGAGCTGTGCAAGTTCGAGTTCATCATGGAGACCAAGCAG
AAGCCTCTGAGAAAGTGGGAGATGCTGCAGATGACAGCCAGAGAGCGCCGGAGGATCATG
TGCTCAGTGACGTTCCATGTCATCGCCATCACCTGTGTGGTCTGGTCCTTGTATGTGCTC
ATCGATCGCACTGCTGAGGAGATCAAGCAGGGGCAGGCAACAGGTACGTCCTGAAGGAAA
GGCGCACCCAGCACGGAGACCCCGAGGAGTGCACTGGGGCATTACTCCATATTGATTCTG
AAGTCAGACCTCAAGTGTCTAGGCTTCTGGAGGGAGGTGTCTGTTGTGAGGCACCACACA
TCCCTTTTGGATGTTTCTTTTAAGTAGTTCTTAAAACCCAGTCGAGGAGTT

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-134, gnl|bosTau2|chr28 (34268613-34268480)
               

               
               1-134, gnl|canFam2|chr28 (5157814-5157597)
               

               
               1-134, gnl|danRer3|chr13 (15477388-15477630)
               

               
               1-134, gnl|dasNov1|scaffold_14271 (15828-16045)
               

               
               1-134, gnl|echTel1|scaffold_303346 (14494-14708)
               

               
               1-134, gnl|fr1|chrUn (118870645-118870448)
               

               
               1-134, gnl|galGal2|chr6 (16844249-16844462)
               

               
               1-134, gnl|hg17|chr10 (45276679-45276896)
               

               
               1-134, gnl|Hg17|chr10 (45276819-45276686)
               

               
               1-134, gnl|loxAfr1|scaffold_157983 (4125-4341)
               

               
               1-134, gnl|mm7|chr6 (116429281-116429065)
               

               
               1-134, gnl|Mm7|chr6 (116429139-116429272)
               

               
               1-134, gnl|monDom2|scaffold_41 (11267074-11267292)
               

               
               1-134, gnl|oryCun1|scaffold_214270 (3574-3357)
               

               
               1-134, gnl|panTro1|chr8 (46215076-46215293)
               

               
               1-134, gnl|rheMac2|chr9 (45819570-45819787)
               

               
               1-134, gnl|rn3|chr4 (152848833-152848617)
               

               
               1-134, gnl|tetNig1|chr17 (5439690-5439506)
               

               
               1-134, gnl|xenTro1|scaffold_171 (1474568-1474355)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr28 (34268613-34268480)
               

               
               1-134, gnl|canFam2|chr28 (5157814-5157597)
               

               
               1-134, gnl|danRer3|chr13 (15477388-15477630)
               

               
               1-134, gnl|dasNov1|scaffold_14271 (15828-16045)
               

               
               1-134, gnl|echTel1|scaffold_303346 (14494-14708)
               

               
               1-134, gnl|fr1|chrUn (118870645-118870448)
               

               
               1-134, gnl|galGal2|chr6 (16844249-16844462)
               

               
               1-134, gnl|hg17|chr10 (45276679-45276896)
               

               
               1-134, gnl|Hg17|chr10 (45276819-45276686)
               

               
               1-134, gnl|loxAfr1|scaffold_157983 (4125-4341)
               

               
               1-134, gnl|mm7|chr6 (116429281-116429065)
               

               
               1-134, gnl|Mm7|chr6 (116429139-116429272)
               

               
               1-134, gnl|monDom2|scaffold_41 (11267074-11267292)
               

               
               1-134, gnl|oryCun1|scaffold_214270 (3574-3357)
               

               
               1-134, gnl|panTro1|chr8 (46215076-46215293)
               

               
               1-134, gnl|rheMac2|chr9 (45819570-45819787)
               

               
               1-134, gnl|rn3|chr4 (152848833-152848617)
               

               
               1-134, gnl|tetNig1|chr17 (5439690-5439506)
               

               
               1-134, gnl|xenTro1|scaffold_171 (1474568-1474355)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-134, gnl\|bosTau2\|chr28 (34268613-34268480)
	1-134, gnl\|canFam2\|chr28 (5157814-5157597)
	1-134, gnl\|danRer3\|chr13 (15477388-15477630)
	1-134, gnl\|dasNov1\|scaffold_14271 (15828-16045)
	1-134, gnl\|echTel1\|scaffold_303346 (14494-14708)
	1-134, gnl\|fr1\|chrUn (118870645-118870448)
	1-134, gnl\|galGal2\|chr6 (16844249-16844462)
	1-134, gnl\|hg17\|chr10 (45276679-45276896)
	1-134, gnl\|Hg17\|chr10 (45276819-45276686)
	1-134, gnl\|loxAfr1\|scaffold_157983 (4125-4341)
	1-134, gnl\|mm7\|chr6 (116429281-116429065)
	1-134, gnl\|Mm7\|chr6 (116429139-116429272)
	1-134, gnl\|monDom2\|scaffold_41 (11267074-11267292)
	1-134, gnl\|oryCun1\|scaffold_214270 (3574-3357)
	1-134, gnl\|panTro1\|chr8 (46215076-46215293)
	1-134, gnl\|rheMac2\|chr9 (45819570-45819787)
	1-134, gnl\|rn3\|chr4 (152848833-152848617)
	1-134, gnl\|tetNig1\|chr17 (5439690-5439506)
	1-134, gnl\|xenTro1\|scaffold_171 (1474568-1474355)