Non-Coding RNA Search

rill305b_g18.y1

Sequence:


               
               CAGGACCCCGGTGGCACCTCTACCTTCTTGACATAGAAGAGGAGCAGCAGCTTGATGATC
TGCATGGCGGGGAGCAGCGGGGAGAAGAGGACCCCCAGCCTGAGGAGGGGGTGCACAATG
AGGGGGCTGCAGTCCAGAGACTGGGGTCATGACCCCTGTGCTGCACCCCATGGCTCTGCT
GCCACCCCGGGGACCCTGGGGAGGGCTTGGCAATGCGTGGCCAAGACTGGGTCCCCTGGG
AGCCGAGGGGTCAGGTCGCTCCAGAATCCTAGGGCTGGGCCTTGCTGTGGTCCCGAGGGG
GACAGGGCTCGGCCTCCCTGAGGGCCGGGCAGTGGGACACGAGGGGAGACGCTCACCAGG
TCAGGGTCTGCCCGTAAATCAGCTCCAGAACGTTCCCTGCGATGTCGAACTCCGGCTTCC
CCCTCTGAAGCTTCTTCTCAGCGATGAGCCTGGGGCAGAGGAGCCCCTGGGGTCAGGTGG
GAGGGCCGGTCCCCAGGACTGACCCAGGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGACCCCGGTGGCACCTCTACCTTCTTGACATAGAAGAGGAGCAGCAGCTTGATGATC
TGCATGGCGGGGAGCAGCGGGGAGAAGAGGACCCCCAGCCTGAGGAGGGGGTGCACAATG
AGGGGGCTGCAGTCCAGAGACTGGGGTCATGACCCCTGTGCTGCACCCCATGGCTCTGCT
GCCACCCCGGGGACCCTGGGGAGGGCTTGGCAATGCGTGGCCAAGACTGGGTCCCCTGGG
AGCCGAGGGGTCAGGTCGCTCCAGAATCCTAGGGCTGGGCCTTGCTGTGGTCCCGAGGGG
GACAGGGCTCGGCCTCCCTGAGGGCCGGGCAGTGGGACACGAGGGGAGACGCTCACCAGG
TCAGGGTCTGCCCGTAAATCAGCTCCAGAACGTTCCCTGCGATGTCGAACTCCGGCTTCC
CCCTCTGAAGCTTCTTCTCAGCGATGAGCCTGGGGCAGAGGAGCCCCTGGGGTCAGGTGG
GAGGGCCGGTCCCCAGGACTGACCCAGGTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-342, + strand, RNAz p=0.998463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-342, + strand, RNAz p=0.998463

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               221-346, + strand, RNAmicro p=0.99632
               

               
               120-217, - strand, RNAmicro p=0.995531

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               221-346, + strand, RNAmicro p=0.99632
               

               
               120-217, - strand, RNAmicro p=0.995531

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-499, gnl|bosTau2|chr19 (47912829-47912316)
               

               
               1-499, gnl|Hg17|chr17 (73626628-73627120)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-499, gnl|bosTau2|chr19 (47912829-47912316)
               

               
               1-499, gnl|Hg17|chr17 (73626628-73627120)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	221-346, + strand, RNAmicro p=0.99632
	120-217, - strand, RNAmicro p=0.995531

	1-499, gnl\|bosTau2\|chr19 (47912829-47912316)
	1-499, gnl\|Hg17\|chr17 (73626628-73627120)