Non-Coding RNA Search

rill305b_k1.y1

Sequence:


               
               GGCACTGGAACTGCTCGGGAAGGGAAAGCATCTGGAAGGGAGTCACGCAGTGTAGAAATG
AGGTTTGACGCTACCGTGATGCCGGCACCTGTTGACCCGAGTGGGGGCCATGGCAGCTGG
CCTGAGCCCAGGCTGGGCGCGCAAGAAGAGTCGGCTCTGGGTTCCGGGAGTGCCAGTGAG
CGGCGCCAGTCACGATTCCTCCTCAACTCCGTCCTCTACCAGGAATACAGCGACGTGGCC
AGCGCCCGAGAACTGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCGGGGGACGAGGCCGAG
GGCGCAGAGGAGGGGCCCGGGCCGCCGCGCGCCAACCTCTCTCCGAGCAGCTCCTTCCGG
GCGCAGCGCTCGGCGCGAGGCTCCACCTTCTCGCTGTGGCAAGACATCCCCGACGTGCGC
GGCAGTGGCGTCCTGGCCACGCTGAGCCTGCGCGACTGCAAACTGCAGGAGGCCAAGTTT
GAGCTGATCACGTCCGAGGCCTCATACATCCACAGTCTGTCCGTGGCTGTGGGCCACTTC
TTAGGCTCAGCTGAGCTGAGTGAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACTGGAACTGCTCGGGAAGGGAAAGCATCTGGAAGGGAGTCACGCAGTGTAGAAATG
AGGTTTGACGCTACCGTGATGCCGGCACCTGTTGACCCGAGTGGGGGCCATGGCAGCTGG
CCTGAGCCCAGGCTGGGCGCGCAAGAAGAGTCGGCTCTGGGTTCCGGGAGTGCCAGTGAG
CGGCGCCAGTCACGATTCCTCCTCAACTCCGTCCTCTACCAGGAATACAGCGACGTGGCC
AGCGCCCGAGAACTGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCGGGGGACGAGGCCGAG
GGCGCAGAGGAGGGGCCCGGGCCGCCGCGCGCCAACCTCTCTCCGAGCAGCTCCTTCCGG
GCGCAGCGCTCGGCGCGAGGCTCCACCTTCTCGCTGTGGCAAGACATCCCCGACGTGCGC
GGCAGTGGCGTCCTGGCCACGCTGAGCCTGCGCGACTGCAAACTGCAGGAGGCCAAGTTT
GAGCTGATCACGTCCGAGGCCTCATACATCCACAGTCTGTCCGTGGCTGTGGGCCACTTC
TTAGGCTCAGCTGAGCTGAGTGAGTGTC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               21-132, gnl|bosTau2|chr2 (83657548-83657659)
               

               
               21-132, gnl|dasNov1|scaffold_35092 (67-303)
               

               
               21-132, gnl|echTel1|scaffold_233829 (9496-9254)
               

               
               21-132, gnl|hg17|chr1 (16279356-16279605)
               

               
               21-132, gnl|Hg17|chr1 (16279580-16279475)
               

               
               21-132, gnl|mm7|chr4 (140626040-140625794)
               

               
               21-132, gnl|Mm7|chr4 (140625817-140625928)
               

               
               21-132, gnl|monDom2|scaffold_109 (2820765-2820494)
               

               
               21-132, gnl|oryCun1|scaffold_90148 (1235-1486)
               

               
               21-132, gnl|panTro1|chr1 (16440673-16440928)
               

               
               21-132, gnl|rheMac2|chr1 (19011016-19011283)
               

               
               21-132, gnl|rn3|chr5 (160110140-160109894)
               


               
               211-472, gnl|bosTau2|chr2 (83658101-83658362)
               

               
               211-472, gnl|Hg17|chr1 (16279009-16278748)
               

               
               211-472, gnl|Mm7|chr4 (140626290-140626551)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-132, gnl|bosTau2|chr2 (83657548-83657659)
               

               
               21-132, gnl|dasNov1|scaffold_35092 (67-303)
               

               
               21-132, gnl|echTel1|scaffold_233829 (9496-9254)
               

               
               21-132, gnl|hg17|chr1 (16279356-16279605)
               

               
               21-132, gnl|Hg17|chr1 (16279580-16279475)
               

               
               21-132, gnl|mm7|chr4 (140626040-140625794)
               

               
               21-132, gnl|Mm7|chr4 (140625817-140625928)
               

               
               21-132, gnl|monDom2|scaffold_109 (2820765-2820494)
               

               
               21-132, gnl|oryCun1|scaffold_90148 (1235-1486)
               

               
               21-132, gnl|panTro1|chr1 (16440673-16440928)
               

               
               21-132, gnl|rheMac2|chr1 (19011016-19011283)
               

               
               21-132, gnl|rn3|chr5 (160110140-160109894)
               


               
               211-472, gnl|bosTau2|chr2 (83658101-83658362)
               

               
               211-472, gnl|Hg17|chr1 (16279009-16278748)
               

               
               211-472, gnl|Mm7|chr4 (140626290-140626551)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	21-132, gnl\|bosTau2\|chr2 (83657548-83657659)
	21-132, gnl\|dasNov1\|scaffold_35092 (67-303)
	21-132, gnl\|echTel1\|scaffold_233829 (9496-9254)
	21-132, gnl\|hg17\|chr1 (16279356-16279605)
	21-132, gnl\|Hg17\|chr1 (16279580-16279475)
	21-132, gnl\|mm7\|chr4 (140626040-140625794)
	21-132, gnl\|Mm7\|chr4 (140625817-140625928)
	21-132, gnl\|monDom2\|scaffold_109 (2820765-2820494)
	21-132, gnl\|oryCun1\|scaffold_90148 (1235-1486)
	21-132, gnl\|panTro1\|chr1 (16440673-16440928)
	21-132, gnl\|rheMac2\|chr1 (19011016-19011283)
	21-132, gnl\|rn3\|chr5 (160110140-160109894)

	211-472, gnl\|bosTau2\|chr2 (83658101-83658362)
	211-472, gnl\|Hg17\|chr1 (16279009-16278748)
	211-472, gnl\|Mm7\|chr4 (140626290-140626551)