Non-Coding RNA Search

rill305b_m10.y1

Sequence:


               
               CATGGTCAAGTACAACTCCTGTGCCAGCAGGCCTTTCTCTGCCCCCTGGTGGTTCTGGCT
CAGTCTGACTGGCGTTAATCTGGCTGGTGCTCTAGGGGTCAAGTTTGTTGGCCTCTTTAT
CATCCTGCAAGTGGGGTGGAACACCCTTTCAGACCTTTGGCACCTGTTTGGAGACCTCAG
TGTTTCAATGGTGACTATGGGAAAACACCTGACTGCTCGCATCCTGTGCCTCATTGTGCT
GCCCTTGGCTCTCTACACAGCCACTTATGCTGTTCACTTCATGGTGCTGAATAAAAGTGG
TCCTGGCGATGGCTTCTTCAGTTCTGCCTTCCAGGCCCGGCTTGCAGGAAACACCCTTCA
CAATGCTTCCATCCCCGAACACCTGGCCTATGGCTCTGTGATCACTGTGAAGAACCTGCG
GATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTCAAGTACAACTCCTGTGCCAGCAGGCCTTTCTCTGCCCCCTGGTGGTTCTGGCT
CAGTCTGACTGGCGTTAATCTGGCTGGTGCTCTAGGGGTCAAGTTTGTTGGCCTCTTTAT
CATCCTGCAAGTGGGGTGGAACACCCTTTCAGACCTTTGGCACCTGTTTGGAGACCTCAG
TGTTTCAATGGTGACTATGGGAAAACACCTGACTGCTCGCATCCTGTGCCTCATTGTGCT
GCCCTTGGCTCTCTACACAGCCACTTATGCTGTTCACTTCATGGTGCTGAATAAAAGTGG
TCCTGGCGATGGCTTCTTCAGTTCTGCCTTCCAGGCCCGGCTTGCAGGAAACACCCTTCA
CAATGCTTCCATCCCCGAACACCTGGCCTATGGCTCTGTGATCACTGTGAAGAACCTGCG
GATGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862342|ref|XP_605907.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862342|ref|XP_605907.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               28-192, + strand, RNAz p=0.727077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-192, + strand, RNAz p=0.727077

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               28-192, gnl|bosTau2|chr10 (62030133-62029969)
               

               
               28-192, gnl|canFam2|chr8 (53152138-53152306)
               

               
               28-192, gnl|danRer3|chr14 (42418700-42418868)
               

               
               28-192, gnl|echTel1|scaffold_308517 (36197-36365)
               

               
               28-192, gnl|fr1|chrUn (268180814-268180982)
               

               
               28-192, gnl|galGal2|chr5 (36009505-36009673)
               

               
               28-192, gnl|hg17|chr14 (76837185-76837353)
               

               
               28-192, gnl|Hg17|chr14 (76837348-76837184)
               

               
               28-192, gnl|loxAfr1|scaffold_222598 (457-289)
               

               
               28-192, gnl|mm7|chr12 (85134245-85134413)
               

               
               28-192, gnl|Mm7|chr12 (85134408-85134244)
               

               
               28-192, gnl|monDom2|scaffold_8 (56142077-56141908)
               

               
               28-192, gnl|oryCun1|scaffold_201112 (12148-12316)
               

               
               28-192, gnl|panTro1|chr15 (76897757-76897925)
               

               
               28-192, gnl|rheMac2|chr7 (140444680-140444848)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-192, gnl|bosTau2|chr10 (62030133-62029969)
               

               
               28-192, gnl|canFam2|chr8 (53152138-53152306)
               

               
               28-192, gnl|danRer3|chr14 (42418700-42418868)
               

               
               28-192, gnl|echTel1|scaffold_308517 (36197-36365)
               

               
               28-192, gnl|fr1|chrUn (268180814-268180982)
               

               
               28-192, gnl|galGal2|chr5 (36009505-36009673)
               

               
               28-192, gnl|hg17|chr14 (76837185-76837353)
               

               
               28-192, gnl|Hg17|chr14 (76837348-76837184)
               

               
               28-192, gnl|loxAfr1|scaffold_222598 (457-289)
               

               
               28-192, gnl|mm7|chr12 (85134245-85134413)
               

               
               28-192, gnl|Mm7|chr12 (85134408-85134244)
               

               
               28-192, gnl|monDom2|scaffold_8 (56142077-56141908)
               

               
               28-192, gnl|oryCun1|scaffold_201112 (12148-12316)
               

               
               28-192, gnl|panTro1|chr15 (76897757-76897925)
               

               
               28-192, gnl|rheMac2|chr7 (140444680-140444848)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	28-192, gnl\|bosTau2\|chr10 (62030133-62029969)
	28-192, gnl\|canFam2\|chr8 (53152138-53152306)
	28-192, gnl\|danRer3\|chr14 (42418700-42418868)
	28-192, gnl\|echTel1\|scaffold_308517 (36197-36365)
	28-192, gnl\|fr1\|chrUn (268180814-268180982)
	28-192, gnl\|galGal2\|chr5 (36009505-36009673)
	28-192, gnl\|hg17\|chr14 (76837185-76837353)
	28-192, gnl\|Hg17\|chr14 (76837348-76837184)
	28-192, gnl\|loxAfr1\|scaffold_222598 (457-289)
	28-192, gnl\|mm7\|chr12 (85134245-85134413)
	28-192, gnl\|Mm7\|chr12 (85134408-85134244)
	28-192, gnl\|monDom2\|scaffold_8 (56142077-56141908)
	28-192, gnl\|oryCun1\|scaffold_201112 (12148-12316)
	28-192, gnl\|panTro1\|chr15 (76897757-76897925)
	28-192, gnl\|rheMac2\|chr7 (140444680-140444848)