Non-Coding RNA Search

rill312b_f16.y1

Sequence:


               
               GACATTGTCAAGGACCCCGTGCCCCCCAGATGAGTATAAGACGGAAGAGGACCCCAAGCT
GTTCCACTCGACCAAGACCCAGCGGGGGCCCCTGTCTGAGAACTGGATCGAGGAGTACAA
GCAGCAGGTCTTCCCCATCATGTGTGCCTACAAGCTCTGCAAGGTGGAGTTCCGCTACTG
GGGCATGCAGTCCAAGATCGAGAGGTTCATCCACGACACGGGCTTGCGGAAGGTGATGGT
GAGGGCCCATCGGCAGGCCTGGTGCTGGCAGGACGAGTGGTTTGGGCTGAACATGGACAA
TATCCGGGAGCTGGAGAAGGAGGCACAGCTCATGCTGTCCCGAAAGATGGCCCAGTTCAA
TGAGGGTGACAAGGAGGCCGCAGAGCTGGCCAAGGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTGTCAAGGACCCCGTGCCCCCCAGATGAGTATAAGACGGAAGAGGACCCCAAGCT
GTTCCACTCGACCAAGACCCAGCGGGGGCCCCTGTCTGAGAACTGGATCGAGGAGTACAA
GCAGCAGGTCTTCCCCATCATGTGTGCCTACAAGCTCTGCAAGGTGGAGTTCCGCTACTG
GGGCATGCAGTCCAAGATCGAGAGGTTCATCCACGACACGGGCTTGCGGAAGGTGATGGT
GAGGGCCCATCGGCAGGCCTGGTGCTGGCAGGACGAGTGGTTTGGGCTGAACATGGACAA
TATCCGGGAGCTGGAGAAGGAGGCACAGCTCATGCTGTCCCGAAAGATGGCCCAGTTCAA
TGAGGGTGACAAGGAGGCCGCAGAGCTGGCCAAGGACG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-222, gnl|bosTau2|chr17 (27477355-27477135)
               

               
               1-222, gnl|canFam2|chr26 (9516899-9516655)
               

               
               1-222, gnl|danRer3|chrNA (187340874-187341115)
               

               
               1-222, gnl|echTel1|scaffold_40102 (1323-1085)
               

               
               1-222, gnl|fr1|chrUn (35878395-35878151)
               

               
               1-222, gnl|galGal2|chr15 (5115805-5115553)
               

               
               1-222, gnl|hg17|chr12 (122019271-122019517)
               

               
               1-222, gnl|Hg17|chr12 (122019496-122019276)
               

               
               1-222, gnl|loxAfr1|scaffold_150072 (852-607)
               

               
               1-222, gnl|mm7|chr5 (123386367-123386609)
               

               
               1-222, gnl|Mm7|chr5 (123386588-123386368)
               

               
               1-222, gnl|monDom2|scaffold_97 (3478102-3478354)
               

               
               1-222, gnl|oryCun1|scaffold_213767 (39824-39580)
               

               
               1-222, gnl|panTro1|chr10 (125099505-125099751)
               

               
               1-222, gnl|rheMac2|chr11 (124278075-124278321)
               

               
               1-222, gnl|rn3|chr12 (33444529-33444283)
               

               
               1-222, gnl|tetNig1|chrUn_random (1287320-1287075)
               

               
               1-222, gnl|xenTro1|scaffold_100 (1911568-1911816)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-222, gnl|bosTau2|chr17 (27477355-27477135)
               

               
               1-222, gnl|canFam2|chr26 (9516899-9516655)
               

               
               1-222, gnl|danRer3|chrNA (187340874-187341115)
               

               
               1-222, gnl|echTel1|scaffold_40102 (1323-1085)
               

               
               1-222, gnl|fr1|chrUn (35878395-35878151)
               

               
               1-222, gnl|galGal2|chr15 (5115805-5115553)
               

               
               1-222, gnl|hg17|chr12 (122019271-122019517)
               

               
               1-222, gnl|Hg17|chr12 (122019496-122019276)
               

               
               1-222, gnl|loxAfr1|scaffold_150072 (852-607)
               

               
               1-222, gnl|mm7|chr5 (123386367-123386609)
               

               
               1-222, gnl|Mm7|chr5 (123386588-123386368)
               

               
               1-222, gnl|monDom2|scaffold_97 (3478102-3478354)
               

               
               1-222, gnl|oryCun1|scaffold_213767 (39824-39580)
               

               
               1-222, gnl|panTro1|chr10 (125099505-125099751)
               

               
               1-222, gnl|rheMac2|chr11 (124278075-124278321)
               

               
               1-222, gnl|rn3|chr12 (33444529-33444283)
               

               
               1-222, gnl|tetNig1|chrUn_random (1287320-1287075)
               

               
               1-222, gnl|xenTro1|scaffold_100 (1911568-1911816)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-222, gnl\|bosTau2\|chr17 (27477355-27477135)
	1-222, gnl\|canFam2\|chr26 (9516899-9516655)
	1-222, gnl\|danRer3\|chrNA (187340874-187341115)
	1-222, gnl\|echTel1\|scaffold_40102 (1323-1085)
	1-222, gnl\|fr1\|chrUn (35878395-35878151)
	1-222, gnl\|galGal2\|chr15 (5115805-5115553)
	1-222, gnl\|hg17\|chr12 (122019271-122019517)
	1-222, gnl\|Hg17\|chr12 (122019496-122019276)
	1-222, gnl\|loxAfr1\|scaffold_150072 (852-607)
	1-222, gnl\|mm7\|chr5 (123386367-123386609)
	1-222, gnl\|Mm7\|chr5 (123386588-123386368)
	1-222, gnl\|monDom2\|scaffold_97 (3478102-3478354)
	1-222, gnl\|oryCun1\|scaffold_213767 (39824-39580)
	1-222, gnl\|panTro1\|chr10 (125099505-125099751)
	1-222, gnl\|rheMac2\|chr11 (124278075-124278321)
	1-222, gnl\|rn3\|chr12 (33444529-33444283)
	1-222, gnl\|tetNig1\|chrUn_random (1287320-1287075)
	1-222, gnl\|xenTro1\|scaffold_100 (1911568-1911816)