Non-Coding RNA Search

rill313b_i19.y1

Sequence:


               
               TTTACACTTGAAAATGTTTTTCAATCACAGATGTTTTGAAACTGCATAAGATTTCCATGA
CATATGGTCTGCTATATGAAACAGGTCCTTTAACCAGAGCAGAGAAGGGGTTAGAAACTG
GATTAGGGATATCCTACAGAAATTGAAGCAGAGAAAAGAGTAGCATGGCATCATTTTTAA
CTCAGAAGTCTTTTGCCCACTCTCAACTTAGTTCAGATTTAGCAAGGCCTAAAAGACGGG
GAATAGATGGTATACCGTGTACAGAATTTTATTCCTTCCCAATCTCTAGAGAAGGAAATA
TGTAGGTAAAACTGAATGTGCTCTATTTTCAGGCAACCAAACATACTTATTAGTTGAATG
TAGAAGAAAGTGTTGACAGACTTAACACAACTGAAAGAACTTTCGGTATCTTCTAAGTCT
TAGAATACAAGCCAATTATTCAGAGTTCTAAAAGTATGCATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACACTTGAAAATGTTTTTCAATCACAGATGTTTTGAAACTGCATAAGATTTCCATGA
CATATGGTCTGCTATATGAAACAGGTCCTTTAACCAGAGCAGAGAAGGGGTTAGAAACTG
GATTAGGGATATCCTACAGAAATTGAAGCAGAGAAAAGAGTAGCATGGCATCATTTTTAA
CTCAGAAGTCTTTTGCCCACTCTCAACTTAGTTCAGATTTAGCAAGGCCTAAAAGACGGG
GAATAGATGGTATACCGTGTACAGAATTTTATTCCTTCCCAATCTCTAGAGAAGGAAATA
TGTAGGTAAAACTGAATGTGCTCTATTTTCAGGCAACCAAACATACTTATTAGTTGAATG
TAGAAGAAAGTGTTGACAGACTTAACACAACTGAAAGAACTTTCGGTATCTTCTAAGTCT
TAGAATACAAGCCAATTATTCAGAGTTCTAAAAGTATGCATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-430, - strand, RNAz p=0.516327

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-430, - strand, RNAz p=0.516327

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-464, gnl|bosTau2|chr2 (42702745-42702293)
               

               
               1-464, gnl|canFam2|chr37 (8800917-8801463)
               

               
               1-464, gnl|echTel1|scaffold_311582 (7224-6698)
               

               
               1-464, gnl|hg17|chr2 (196826518-196827056)
               

               
               1-464, gnl|Hg17|chr2 (196827185-196826726)
               

               
               1-464, gnl|mm7|chr1 (53990057-53990446)
               

               
               1-464, gnl|Mm7|chr1 (53990562-53990176)
               

               
               1-464, gnl|monDom2|scaffold_2 (105680127-105680609)
               

               
               1-464, gnl|oryCun1|scaffold_171898 (19188-19650)
               

               
               1-464, gnl|panTro1|chr13 (86744404-86744948)
               

               
               1-464, gnl|rheMac2|chr12 (59772646-59773182)
               

               
               1-464, gnl|rn3|chr9 (52568640-52569028)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-464, gnl|bosTau2|chr2 (42702745-42702293)
               

               
               1-464, gnl|canFam2|chr37 (8800917-8801463)
               

               
               1-464, gnl|echTel1|scaffold_311582 (7224-6698)
               

               
               1-464, gnl|hg17|chr2 (196826518-196827056)
               

               
               1-464, gnl|Hg17|chr2 (196827185-196826726)
               

               
               1-464, gnl|mm7|chr1 (53990057-53990446)
               

               
               1-464, gnl|Mm7|chr1 (53990562-53990176)
               

               
               1-464, gnl|monDom2|scaffold_2 (105680127-105680609)
               

               
               1-464, gnl|oryCun1|scaffold_171898 (19188-19650)
               

               
               1-464, gnl|panTro1|chr13 (86744404-86744948)
               

               
               1-464, gnl|rheMac2|chr12 (59772646-59773182)
               

               
               1-464, gnl|rn3|chr9 (52568640-52569028)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-464, gnl\|bosTau2\|chr2 (42702745-42702293)
	1-464, gnl\|canFam2\|chr37 (8800917-8801463)
	1-464, gnl\|echTel1\|scaffold_311582 (7224-6698)
	1-464, gnl\|hg17\|chr2 (196826518-196827056)
	1-464, gnl\|Hg17\|chr2 (196827185-196826726)
	1-464, gnl\|mm7\|chr1 (53990057-53990446)
	1-464, gnl\|Mm7\|chr1 (53990562-53990176)
	1-464, gnl\|monDom2\|scaffold_2 (105680127-105680609)
	1-464, gnl\|oryCun1\|scaffold_171898 (19188-19650)
	1-464, gnl\|panTro1\|chr13 (86744404-86744948)
	1-464, gnl\|rheMac2\|chr12 (59772646-59773182)
	1-464, gnl\|rn3\|chr9 (52568640-52569028)