Non-Coding RNA Search

rill322b_m13.y1

Sequence:


               
               CTCCCCTCACCCCTGTACCCCCGGGCTGGGGGAGCTGGCTCTGCCCTGCCCTCCTTGCCC
GGGGTTGTGGTCTCAGCCCCCCAGAGCCCGCTGGTGCACCTGTTACTGTTGGACTTTCCA
CTGAGATCTACTGGATAAAGAATAAAGTTCTATTTATTCTaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCTCACCCCTGTACCCCCGGGCTGGGGGAGCTGGCTCTGCCCTGCCCTCCTTGCCC
GGGGTTGTGGTCTCAGCCCCCCAGAGCCCGCTGGTGCACCTGTTACTGTTGGACTTTCCA
CTGAGATCTACTGGATAAAGAATAAAGTTCTATTTATTCTaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, + strand, RNAz p=0.999626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.999626

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000964, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000964, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-161, gnl|bosTau2|chr19 (34306218-34306055)
               

               
               1-161, gnl|canFam2|chr9 (25582203-25582042)
               

               
               1-161, gnl|echTel1|scaffold_325208 (5614-5754)
               

               
               1-161, gnl|hg17|chr17 (35767244-35767400)
               

               
               1-161, gnl|Hg17|chr17 (35767262-35767421)
               

               
               1-161, gnl|mm7|chr11 (99083812-99083957)
               

               
               1-161, gnl|Mm7|chr11 (99083832-99083978)
               

               
               1-161, gnl|monDom2|scaffold_18 (49570560-49570778)
               

               
               1-161, gnl|oryCun1|scaffold_206358 (59370-59531)
               

               
               1-161, gnl|panTro1|chr19 (39007661-39007817)
               

               
               1-161, gnl|rheMac2|chr16 (50478355-50478506)
               

               
               1-161, gnl|rn3|chr10 (87768259-87768404)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr19 (34306218-34306055)
               

               
               1-161, gnl|canFam2|chr9 (25582203-25582042)
               

               
               1-161, gnl|echTel1|scaffold_325208 (5614-5754)
               

               
               1-161, gnl|hg17|chr17 (35767244-35767400)
               

               
               1-161, gnl|Hg17|chr17 (35767262-35767421)
               

               
               1-161, gnl|mm7|chr11 (99083812-99083957)
               

               
               1-161, gnl|Mm7|chr11 (99083832-99083978)
               

               
               1-161, gnl|monDom2|scaffold_18 (49570560-49570778)
               

               
               1-161, gnl|oryCun1|scaffold_206358 (59370-59531)
               

               
               1-161, gnl|panTro1|chr19 (39007661-39007817)
               

               
               1-161, gnl|rheMac2|chr16 (50478355-50478506)
               

               
               1-161, gnl|rn3|chr10 (87768259-87768404)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-161, gnl\|bosTau2\|chr19 (34306218-34306055)
	1-161, gnl\|canFam2\|chr9 (25582203-25582042)
	1-161, gnl\|echTel1\|scaffold_325208 (5614-5754)
	1-161, gnl\|hg17\|chr17 (35767244-35767400)
	1-161, gnl\|Hg17\|chr17 (35767262-35767421)
	1-161, gnl\|mm7\|chr11 (99083812-99083957)
	1-161, gnl\|Mm7\|chr11 (99083832-99083978)
	1-161, gnl\|monDom2\|scaffold_18 (49570560-49570778)
	1-161, gnl\|oryCun1\|scaffold_206358 (59370-59531)
	1-161, gnl\|panTro1\|chr19 (39007661-39007817)
	1-161, gnl\|rheMac2\|chr16 (50478355-50478506)
	1-161, gnl\|rn3\|chr10 (87768259-87768404)