Non-Coding RNA Search

rill330b_n9.y1

Sequence:


               
               ATGTGCCTCTGGGACGGGCACAGTAGACTCATTGTGTGGGGCGGGATGGTACTGAGCTGG
GACTCAGAACTGTCCTTTGCTAAACAGTCGTCCTATTGTTAACCGCTTGGGTGCGTTCCA
CGATTTTCCTTATTAGAGTTGCTGCGGCCACGGACATCTTCAAGCCTGCAGCTTTTTGTC
TCCAGTTTGAATTCTCGCCTTGTGATCGCTTTCCCGGCGGAGGCTCACTGGGTCAGAGGG
GCACACGTGTCAGCGCCAGGCTGTGTTCCACAAGGGCTGTGCCAGTTCCCAAGGCCAGGG
TCGCACATTCTTGGAGCAATAACCACAACTGCTGTTTCTTACGTGCTTTCCCATTTCCAA
AGCCCTTGCCCCTGTGGTGCCCACAGCATCCCTTTGAAAGCAGGCTTTGCTTGGATCACC
CTTTCCAGCTAGTCCAGGGCAACTCAGAGGTTGGCTTGCTCGAAGGTGGGCGGCTGCCGG
GGTGAAATAGGGACCCTCGGGCAGGGCTGACTGAGCCAGGCCTGGTTACCTGCCATGCTT
CATCCAGGCCTTACAATACCCACATGAGAAAGTACCACTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGCCTCTGGGACGGGCACAGTAGACTCATTGTGTGGGGCGGGATGGTACTGAGCTGG
GACTCAGAACTGTCCTTTGCTAAACAGTCGTCCTATTGTTAACCGCTTGGGTGCGTTCCA
CGATTTTCCTTATTAGAGTTGCTGCGGCCACGGACATCTTCAAGCCTGCAGCTTTTTGTC
TCCAGTTTGAATTCTCGCCTTGTGATCGCTTTCCCGGCGGAGGCTCACTGGGTCAGAGGG
GCACACGTGTCAGCGCCAGGCTGTGTTCCACAAGGGCTGTGCCAGTTCCCAAGGCCAGGG
TCGCACATTCTTGGAGCAATAACCACAACTGCTGTTTCTTACGTGCTTTCCCATTTCCAA
AGCCCTTGCCCCTGTGGTGCCCACAGCATCCCTTTGAAAGCAGGCTTTGCTTGGATCACC
CTTTCCAGCTAGTCCAGGGCAACTCAGAGGTTGGCTTGCTCGAAGGTGGGCGGCTGCCGG
GGTGAAATAGGGACCCTCGGGCAGGGCTGACTGAGCCAGGCCTGGTTACCTGCCATGCTT
CATCCAGGCCTTACAATACCCACATGAGAAAGTACCACTGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               10-125, - strand, RNAz p=0.507981
               

               
               317-436, - strand, RNAz p=0.554983

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-125, - strand, RNAz p=0.507981
               

               
               317-436, - strand, RNAz p=0.554983

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-543, gnl|bosTau2|chr5 (67300051-67299523)
               

               
               10-543, gnl|Hg17|chr22 (36385222-36385809)
               

               
               10-543, gnl|Mm7|chr15 (79000492-79000940)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-543, gnl|bosTau2|chr5 (67300051-67299523)
               

               
               10-543, gnl|Hg17|chr22 (36385222-36385809)
               

               
               10-543, gnl|Mm7|chr15 (79000492-79000940)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	10-125, - strand, RNAz p=0.507981
	317-436, - strand, RNAz p=0.554983

	10-543, gnl\|bosTau2\|chr5 (67300051-67299523)
	10-543, gnl\|Hg17\|chr22 (36385222-36385809)
	10-543, gnl\|Mm7\|chr15 (79000492-79000940)