Non-Coding RNA Search

rill335b_h6.y1

Sequence:


               
               CAACTCTGTGAAGTCATGCTTCCTGTGCCTCCAGGTACCTAACCAGGCTCTGAAAAGCTT
CTACGTATAGTTCTCAACTTCCTGATTTATTCACACACTGCAGAGACCCAGGCTTTGCCT
TACAAAATAATATGATCACTTTTAGAAAGTTATTACTGGTGGTTTCTAAGATCTACTATC
TCTGATTAGGCACTTCGTATCTTTCTCTCTCTTTAGTGTTTAGACCCTAATCAATCTCAG
TTCTTTCCCAGAATGTCCTCTTGAATTCCTACATAGATTTGCTGCACAGTGCTTATGGTC
TCAGTTGCTGACTACAGCATTGACTGTAATTTTGGAGTGTTGGGGTTTTGTTAGTCAGCT
GTTTGCTGAAAATTCATTTTCTGTGACCTTATTTTTTTTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTCTGTGAAGTCATGCTTCCTGTGCCTCCAGGTACCTAACCAGGCTCTGAAAAGCTT
CTACGTATAGTTCTCAACTTCCTGATTTATTCACACACTGCAGAGACCCAGGCTTTGCCT
TACAAAATAATATGATCACTTTTAGAAAGTTATTACTGGTGGTTTCTAAGATCTACTATC
TCTGATTAGGCACTTCGTATCTTTCTCTCTCTTTAGTGTTTAGACCCTAATCAATCTCAG
TTCTTTCCCAGAATGTCCTCTTGAATTCCTACATAGATTTGCTGCACAGTGCTTATGGTC
TCAGTTGCTGACTACAGCATTGACTGTAATTTTGGAGTGTTGGGGTTTTGTTAGTCAGCT
GTTTGCTGAAAATTCATTTTCTGTGACCTTATTTTTTTTCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-395, + strand, RNAz p=0.864895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-395, + strand, RNAz p=0.864895

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-395, gnl|bosTau2|chr8 (3201805-3202198)
               

               
               1-395, gnl|canFam2|chr25 (26944919-26945212)
               

               
               1-395, gnl|dasNov1|scaffold_271536 (564-841)
               

               
               1-395, gnl|hg17|chr4 (174656696-174657029)
               

               
               1-395, gnl|Hg17|chr4 (174656720-174657143)
               

               
               1-395, gnl|loxAfr1|scaffold_12323 (18287-17904)
               

               
               1-395, gnl|panTro1|chr3 (192604388-192604721)
               

               
               1-395, gnl|rheMac2|chr5 (165415603-165415937)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr8 (3201805-3202198)
               

               
               1-395, gnl|canFam2|chr25 (26944919-26945212)
               

               
               1-395, gnl|dasNov1|scaffold_271536 (564-841)
               

               
               1-395, gnl|hg17|chr4 (174656696-174657029)
               

               
               1-395, gnl|Hg17|chr4 (174656720-174657143)
               

               
               1-395, gnl|loxAfr1|scaffold_12323 (18287-17904)
               

               
               1-395, gnl|panTro1|chr3 (192604388-192604721)
               

               
               1-395, gnl|rheMac2|chr5 (165415603-165415937)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-395, gnl\|bosTau2\|chr8 (3201805-3202198)
	1-395, gnl\|canFam2\|chr25 (26944919-26945212)
	1-395, gnl\|dasNov1\|scaffold_271536 (564-841)
	1-395, gnl\|hg17\|chr4 (174656696-174657029)
	1-395, gnl\|Hg17\|chr4 (174656720-174657143)
	1-395, gnl\|loxAfr1\|scaffold_12323 (18287-17904)
	1-395, gnl\|panTro1\|chr3 (192604388-192604721)
	1-395, gnl\|rheMac2\|chr5 (165415603-165415937)