Non-Coding RNA Search

risp02_d23.y1

Sequence:


               
               TGATTATGAACAACTCAGCGAACTGCTGAAGAAACAGGCTCAGTTTTATGAAAACATCGT
CAAGGTGATAAGACCCAAGCCTGACTACTTTGCTGTTGGTTACTATGGACAAGGATTCCC
CACGTTTCTGCGGCTTTAAGAGGCCACTTCAGGATGCAAAGCAATTGACATTTCTACAAA
ATGTTATTAGCGCTTTCATCTATAACTCACTAGTGTTTTTCTATTAAAGACTTTATATAC
ATTTTTATTATTCTGTTCTCCTTCTGGTGTAAAGCATAATAAATGCATGCTAGTTTTGTA
GTAGCCTGTTACACATTAAATCATCCTGAATTTCTGAAATGTTTGGCTTTATGTAGCCTT
AAAAGACGCCCATACGGTGTATTTATATTTCTAATTAAGACTACATATTACTCTGGTTTC
TGCTTGAAATTATTTTTTTAGAGAAAGAGAACATGTTTCTTCTGTAATGGGTGCTTGAAG
ACATACCTAAGCATAGAGTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTATGAACAACTCAGCGAACTGCTGAAGAAACAGGCTCAGTTTTATGAAAACATCGT
CAAGGTGATAAGACCCAAGCCTGACTACTTTGCTGTTGGTTACTATGGACAAGGATTCCC
CACGTTTCTGCGGCTTTAAGAGGCCACTTCAGGATGCAAAGCAATTGACATTTCTACAAA
ATGTTATTAGCGCTTTCATCTATAACTCACTAGTGTTTTTCTATTAAAGACTTTATATAC
ATTTTTATTATTCTGTTCTCCTTCTGGTGTAAAGCATAATAAATGCATGCTAGTTTTGTA
GTAGCCTGTTACACATTAAATCATCCTGAATTTCTGAAATGTTTGGCTTTATGTAGCCTT
AAAAGACGCCCATACGGTGTATTTATATTTCTAATTAAGACTACATATTACTCTGGTTTC
TGCTTGAAATTATTTTTTTAGAGAAAGAGAACATGTTTCTTCTGTAATGGGTGCTTGAAG
ACATACCTAAGCATAGAGTAAAAAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               132-509, gnl|bosTau2|chr26 (31998771-31998393)
               

               
               132-509, gnl|canFam2|chr28 (39361008-39361387)
               

               
               132-509, gnl|dasNov1|scaffold_25668 (8351-7973)
               

               
               132-509, gnl|hg17|chr10 (129094918-129095295)
               

               
               132-509, gnl|Hg17|chr10 (129094991-129095363)
               

               
               132-509, gnl|loxAfr1|scaffold_24364 (7710-8093)
               

               
               132-509, gnl|mm7|chr7 (131539965-131540342)
               

               
               132-509, gnl|Mm7|chr7 (131540036-131540414)
               

               
               132-509, gnl|oryCun1|scaffold_182635 (113621-113251)
               

               
               132-509, gnl|panTro1|chr8 (131682921-131683298)
               

               
               132-509, gnl|rheMac2|chr9 (127038306-127038683)
               

               
               132-509, gnl|rn3|chr1 (194906945-194907322)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-509, gnl|bosTau2|chr26 (31998771-31998393)
               

               
               132-509, gnl|canFam2|chr28 (39361008-39361387)
               

               
               132-509, gnl|dasNov1|scaffold_25668 (8351-7973)
               

               
               132-509, gnl|hg17|chr10 (129094918-129095295)
               

               
               132-509, gnl|Hg17|chr10 (129094991-129095363)
               

               
               132-509, gnl|loxAfr1|scaffold_24364 (7710-8093)
               

               
               132-509, gnl|mm7|chr7 (131539965-131540342)
               

               
               132-509, gnl|Mm7|chr7 (131540036-131540414)
               

               
               132-509, gnl|oryCun1|scaffold_182635 (113621-113251)
               

               
               132-509, gnl|panTro1|chr8 (131682921-131683298)
               

               
               132-509, gnl|rheMac2|chr9 (127038306-127038683)
               

               
               132-509, gnl|rn3|chr1 (194906945-194907322)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	132-509, gnl\|bosTau2\|chr26 (31998771-31998393)
	132-509, gnl\|canFam2\|chr28 (39361008-39361387)
	132-509, gnl\|dasNov1\|scaffold_25668 (8351-7973)
	132-509, gnl\|hg17\|chr10 (129094918-129095295)
	132-509, gnl\|Hg17\|chr10 (129094991-129095363)
	132-509, gnl\|loxAfr1\|scaffold_24364 (7710-8093)
	132-509, gnl\|mm7\|chr7 (131539965-131540342)
	132-509, gnl\|Mm7\|chr7 (131540036-131540414)
	132-509, gnl\|oryCun1\|scaffold_182635 (113621-113251)
	132-509, gnl\|panTro1\|chr8 (131682921-131683298)
	132-509, gnl\|rheMac2\|chr9 (127038306-127038683)
	132-509, gnl\|rn3\|chr1 (194906945-194907322)