Non-Coding RNA Search

risp02_h17.y1

Sequence:


               
               GTTCAGGTTTGTTCTTTATGTGAACGTGCTCAGCATTCCTCTATGTTCTGGATGTACTGG
AAATAAAAGGATTTAAGAGATCATGGTGTACATCCCCTAGGCATTGACCAGAAAAGGAGC
TGATGGATATTTCTCTGCTACTGTGATGTCACCCACCCTTTCTGGTTCCCTGCTGGGATT
GTCAAGCATGGATTTTATTTCTTTGAACATAATCTTTCTTCAATCAACCACATAGAATAT
TGGCTCTTCTAGCAGCTATCAGAAGATTTAATCTTGAATTGACTTGAATAGGAGTGTGTG
AAGACATCTTCTCCAAGTTCTCTAAGGTCATCCTGCTTTGGAATATTTGTAGACCATATC
ATGAAATCATTTCTTATAAAGAAGAACTAGGGATAGAAGGACTCAAAATTGGTCAGTAAA
GCATTTTAAATCAATGGTGACTATACAATCACTGCTTTAGGCAAACACAGTACCAGATAA
TTCTCTACACATAGAGCAGGCAAATGGAAGCATGTCCTTCAGAGGCTGGAGCAGATGGGT
CATAATTCTGCAACAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGGTTTGTTCTTTATGTGAACGTGCTCAGCATTCCTCTATGTTCTGGATGTACTGG
AAATAAAAGGATTTAAGAGATCATGGTGTACATCCCCTAGGCATTGACCAGAAAAGGAGC
TGATGGATATTTCTCTGCTACTGTGATGTCACCCACCCTTTCTGGTTCCCTGCTGGGATT
GTCAAGCATGGATTTTATTTCTTTGAACATAATCTTTCTTCAATCAACCACATAGAATAT
TGGCTCTTCTAGCAGCTATCAGAAGATTTAATCTTGAATTGACTTGAATAGGAGTGTGTG
AAGACATCTTCTCCAAGTTCTCTAAGGTCATCCTGCTTTGGAATATTTGTAGACCATATC
ATGAAATCATTTCTTATAAAGAAGAACTAGGGATAGAAGGACTCAAAATTGGTCAGTAAA
GCATTTTAAATCAATGGTGACTATACAATCACTGCTTTAGGCAAACACAGTACCAGATAA
TTCTCTACACATAGAGCAGGCAAATGGAAGCATGTCCTTCAGAGGCTGGAGCAGATGGGT
CATAATTCTGCAACAAGCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               325-559, gnl|bosTau2|chr24 (18292722-18292955)
               

               
               325-559, gnl|canFam2|chr7 (58282543-58282122)
               

               
               325-559, gnl|dasNov1|scaffold_109418 (4415-4765)
               

               
               325-559, gnl|echTel1|scaffold_319304 (36499-36910)
               

               
               325-559, gnl|hg17|chr18 (30452203-30452630)
               

               
               325-559, gnl|Hg17|chr18 (30452252-30452481)
               

               
               325-559, gnl|loxAfr1|scaffold_65672 (4980-4515)
               

               
               325-559, gnl|mm7|chr18 (23817048-23817472)
               

               
               325-559, gnl|Mm7|chr18 (23817097-23817329)
               

               
               325-559, gnl|oryCun1|scaffold_197240 (149842-150264)
               

               
               325-559, gnl|panTro1|chr17 (26396384-26396811)
               

               
               325-559, gnl|rheMac2|chr18 (27615048-27615476)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               325-559, gnl|bosTau2|chr24 (18292722-18292955)
               

               
               325-559, gnl|canFam2|chr7 (58282543-58282122)
               

               
               325-559, gnl|dasNov1|scaffold_109418 (4415-4765)
               

               
               325-559, gnl|echTel1|scaffold_319304 (36499-36910)
               

               
               325-559, gnl|hg17|chr18 (30452203-30452630)
               

               
               325-559, gnl|Hg17|chr18 (30452252-30452481)
               

               
               325-559, gnl|loxAfr1|scaffold_65672 (4980-4515)
               

               
               325-559, gnl|mm7|chr18 (23817048-23817472)
               

               
               325-559, gnl|Mm7|chr18 (23817097-23817329)
               

               
               325-559, gnl|oryCun1|scaffold_197240 (149842-150264)
               

               
               325-559, gnl|panTro1|chr17 (26396384-26396811)
               

               
               325-559, gnl|rheMac2|chr18 (27615048-27615476)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               isp (0.150376)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	325-559, gnl\|bosTau2\|chr24 (18292722-18292955)
	325-559, gnl\|canFam2\|chr7 (58282543-58282122)
	325-559, gnl\|dasNov1\|scaffold_109418 (4415-4765)
	325-559, gnl\|echTel1\|scaffold_319304 (36499-36910)
	325-559, gnl\|hg17\|chr18 (30452203-30452630)
	325-559, gnl\|Hg17\|chr18 (30452252-30452481)
	325-559, gnl\|loxAfr1\|scaffold_65672 (4980-4515)
	325-559, gnl\|mm7\|chr18 (23817048-23817472)
	325-559, gnl\|Mm7\|chr18 (23817097-23817329)
	325-559, gnl\|oryCun1\|scaffold_197240 (149842-150264)
	325-559, gnl\|panTro1\|chr17 (26396384-26396811)
	325-559, gnl\|rheMac2\|chr18 (27615048-27615476)