Non-Coding RNA Search

risp04_e1.y1

Sequence:


               
               AACTGAATTTACAGTGAGTGGACTTGTAGAAGACCAAAGATATGAATTTAGAGTAATTGC
AAGAAATGCAGCTGGCAACTTTAGTGAACCATCTGAAAGCACTGGTGCCATTACTGCACG
AGATGAAATTGATGCACCCAATGCCTCACTGGATCCCAAATATAAAGATGTCATTGTTGT
CCATGCAGGAGAGACTTTTGTCCTTGAAGCTGATATTCGTGGCAAACCTATACCTGATAT
CGTCTGGTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGAATTTACAGTGAGTGGACTTGTAGAAGACCAAAGATATGAATTTAGAGTAATTGC
AAGAAATGCAGCTGGCAACTTTAGTGAACCATCTGAAAGCACTGGTGCCATTACTGCACG
AGATGAAATTGATGCACCCAATGCCTCACTGGATCCCAAATATAAAGATGTCATTGTTGT
CCATGCAGGAGAGACTTTTGTCCTTGAAGCTGATATTCGTGGCAAACCTATACCTGATAT
CGTCTGGTTAAAAAA

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               2-253, gnl|bosTau2|chr2 (7840308-7840559)
               

               
               2-253, gnl|danRer3|chr9 (37669557-37670088)
               

               
               2-253, gnl|dasNov1|scaffold_2524 (57699-57168)
               

               
               2-253, gnl|echTel1|scaffold_317123 (330607-330076)
               

               
               2-253, gnl|fr1|chrUn (199964361-199964892)
               

               
               2-253, gnl|galGal2|chr7 (16151774-16151243)
               

               
               2-253, gnl|hg17|chr2 (179254077-179254608)
               

               
               2-253, gnl|Hg17|chr2 (179254684-179254433)
               

               
               2-253, gnl|loxAfr1|scaffold_7218 (54240-54771)
               

               
               2-253, gnl|mm7|chr2 (76584312-76584843)
               

               
               2-253, gnl|Mm7|chr2 (76584919-76584668)
               

               
               2-253, gnl|monDom2|scaffold_2 (79410161-79410692)
               

               
               2-253, gnl|oryCun1|scaffold_174430 (44912-45443)
               

               
               2-253, gnl|panTro1|chr13 (69040237-69040767)
               

               
               2-253, gnl|rheMac2|chr12 (42215014-42215545)
               

               
               2-253, gnl|tetNig1|chrUn_random (42014979-42014448)
               

               
               2-253, gnl|xenTro1|scaffold_546 (339323-339854)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-253, gnl|bosTau2|chr2 (7840308-7840559)
               

               
               2-253, gnl|danRer3|chr9 (37669557-37670088)
               

               
               2-253, gnl|dasNov1|scaffold_2524 (57699-57168)
               

               
               2-253, gnl|echTel1|scaffold_317123 (330607-330076)
               

               
               2-253, gnl|fr1|chrUn (199964361-199964892)
               

               
               2-253, gnl|galGal2|chr7 (16151774-16151243)
               

               
               2-253, gnl|hg17|chr2 (179254077-179254608)
               

               
               2-253, gnl|Hg17|chr2 (179254684-179254433)
               

               
               2-253, gnl|loxAfr1|scaffold_7218 (54240-54771)
               

               
               2-253, gnl|mm7|chr2 (76584312-76584843)
               

               
               2-253, gnl|Mm7|chr2 (76584919-76584668)
               

               
               2-253, gnl|monDom2|scaffold_2 (79410161-79410692)
               

               
               2-253, gnl|oryCun1|scaffold_174430 (44912-45443)
               

               
               2-253, gnl|panTro1|chr13 (69040237-69040767)
               

               
               2-253, gnl|rheMac2|chr12 (42215014-42215545)
               

               
               2-253, gnl|tetNig1|chrUn_random (42014979-42014448)
               

               
               2-253, gnl|xenTro1|scaffold_546 (339323-339854)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	2-253, gnl\|bosTau2\|chr2 (7840308-7840559)
	2-253, gnl\|danRer3\|chr9 (37669557-37670088)
	2-253, gnl\|dasNov1\|scaffold_2524 (57699-57168)
	2-253, gnl\|echTel1\|scaffold_317123 (330607-330076)
	2-253, gnl\|fr1\|chrUn (199964361-199964892)
	2-253, gnl\|galGal2\|chr7 (16151774-16151243)
	2-253, gnl\|hg17\|chr2 (179254077-179254608)
	2-253, gnl\|Hg17\|chr2 (179254684-179254433)
	2-253, gnl\|loxAfr1\|scaffold_7218 (54240-54771)
	2-253, gnl\|mm7\|chr2 (76584312-76584843)
	2-253, gnl\|Mm7\|chr2 (76584919-76584668)
	2-253, gnl\|monDom2\|scaffold_2 (79410161-79410692)
	2-253, gnl\|oryCun1\|scaffold_174430 (44912-45443)
	2-253, gnl\|panTro1\|chr13 (69040237-69040767)
	2-253, gnl\|rheMac2\|chr12 (42215014-42215545)
	2-253, gnl\|tetNig1\|chrUn_random (42014979-42014448)
	2-253, gnl\|xenTro1\|scaffold_546 (339323-339854)