Non-Coding RNA Search

risp08_n17.y1

Sequence:


               
               GTCCTATTAAGTCCCCGTAGCTTAAATATTGGCACCAAAGCACCGATTTGAAATAAAACA
CAATTCAATTTACAATTATCCCAGAAAGAAACCGGTGTGCAGTAAGGCATCTGAGTTATT
TAACTCTCAAAGAAACCCATCTTCTTGGTACTCTGTAGCAAGACTTCCATTTAAGCATAA
TTATAATCTGATGTAGCAATTTTACCATACCGCCAGCTTAACTGAAAAAAGACTTTACCT
GCAATAAACTTTACGAAAAGATTATATATTAGTTTGTCCCTTCAGCAATGACTGCTCACT
TTCTCTTTCACTACAGGAAGACTAATAAGAACCTTACAAAAAAGCATCAACTCCATCAAA
ATGGCAGGAAATAAACATATCTTGACATTAATAACCAAAATTCCACTTTCTGAACATTGA
GGTACTTGCCAACAACTGTGCTACAGTTATTAAGAAAATACATTTGCCCTAAGCATAGCC
GGTGTCTCAATTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTATTAAGTCCCCGTAGCTTAAATATTGGCACCAAAGCACCGATTTGAAATAAAACA
CAATTCAATTTACAATTATCCCAGAAAGAAACCGGTGTGCAGTAAGGCATCTGAGTTATT
TAACTCTCAAAGAAACCCATCTTCTTGGTACTCTGTAGCAAGACTTCCATTTAAGCATAA
TTATAATCTGATGTAGCAATTTTACCATACCGCCAGCTTAACTGAAAAAAGACTTTACCT
GCAATAAACTTTACGAAAAGATTATATATTAGTTTGTCCCTTCAGCAATGACTGCTCACT
TTCTCTTTCACTACAGGAAGACTAATAAGAACCTTACAAAAAAGCATCAACTCCATCAAA
ATGGCAGGAAATAAACATATCTTGACATTAATAACCAAAATTCCACTTTCTGAACATTGA
GGTACTTGCCAACAACTGTGCTACAGTTATTAAGAAAATACATTTGCCCTAAGCATAGCC
GGTGTCTCAATTATG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-126, gnl|bosTau2|chr25 (17964279-17964399)
               

               
               1-126, gnl|Hg17|chr16 (21897322-21897184)
               


               
               150-406, gnl|bosTau2|chr25 (17964402-17964654)
               

               
               150-406, gnl|canFam2|chr6 (26659597-26659095)
               

               
               150-406, gnl|dasNov1|scaffold_16063 (9356-9807)
               

               
               150-406, gnl|echTel1|scaffold_98384 (2015-1544)
               

               
               150-406, gnl|hg17|chr16 (21896597-21897077)
               

               
               150-406, gnl|Hg17|chr16 (21897181-21896922)
               

               
               150-406, gnl|oryCun1|scaffold_176507 (31614-31161)
               

               
               150-406, gnl|panTro1|chr18_random (10056591-10057071)
               

               
               150-406, gnl|rheMac2|chr20 (20388774-20389270)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-126, gnl|bosTau2|chr25 (17964279-17964399)
               

               
               1-126, gnl|Hg17|chr16 (21897322-21897184)
               


               
               150-406, gnl|bosTau2|chr25 (17964402-17964654)
               

               
               150-406, gnl|canFam2|chr6 (26659597-26659095)
               

               
               150-406, gnl|dasNov1|scaffold_16063 (9356-9807)
               

               
               150-406, gnl|echTel1|scaffold_98384 (2015-1544)
               

               
               150-406, gnl|hg17|chr16 (21896597-21897077)
               

               
               150-406, gnl|Hg17|chr16 (21897181-21896922)
               

               
               150-406, gnl|oryCun1|scaffold_176507 (31614-31161)
               

               
               150-406, gnl|panTro1|chr18_random (10056591-10057071)
               

               
               150-406, gnl|rheMac2|chr20 (20388774-20389270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-126, gnl\|bosTau2\|chr25 (17964279-17964399)
	1-126, gnl\|Hg17\|chr16 (21897322-21897184)

	150-406, gnl\|bosTau2\|chr25 (17964402-17964654)
	150-406, gnl\|canFam2\|chr6 (26659597-26659095)
	150-406, gnl\|dasNov1\|scaffold_16063 (9356-9807)
	150-406, gnl\|echTel1\|scaffold_98384 (2015-1544)
	150-406, gnl\|hg17\|chr16 (21896597-21897077)
	150-406, gnl\|Hg17\|chr16 (21897181-21896922)
	150-406, gnl\|oryCun1\|scaffold_176507 (31614-31161)
	150-406, gnl\|panTro1\|chr18_random (10056591-10057071)
	150-406, gnl\|rheMac2\|chr20 (20388774-20389270)