Non-Coding RNA Search

risp09_k12.y1

Sequence:


               
               AGAATTCTGAATAGACAGCAGAGCAGCATGCCCAGCTTACACATTCCAAAAGGCCAATAT
ATGTATTCAGCTTGGTAAATATGGCTTTAAAAATACCTCGCCATATTTAGCCACTCCTAA
ATATGTATTTACACAAGTCTACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTCTGAATAGACAGCAGAGCAGCATGCCCAGCTTACACATTCCAAAAGGCCAATAT
ATGTATTCAGCTTGGTAAATATGGCTTTAAAAATACCTCGCCATATTTAGCCACTCCTAA
ATATGTATTTACACAAGTCTACACA

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-145, gnl|bosTau2|chr7 (56261560-56261703)
               

               
               1-145, gnl|canFam2|chr3 (22532007-22531741)
               

               
               1-145, gnl|dasNov1|scaffold_143369 (5438-5167)
               

               
               1-145, gnl|echTel1|scaffold_294286 (18398-18131)
               

               
               1-145, gnl|galGal2|chrW (888197-888470)
               

               
               1-145, gnl|hg17|chr5 (88385184-88385444)
               

               
               1-145, gnl|Hg17|chr5 (88385425-88385285)
               

               
               1-145, gnl|mm7|chr13 (80420840-80420576)
               

               
               1-145, gnl|Mm7|chr13 (80420592-80420736)
               

               
               1-145, gnl|panTro1|chr4 (26850805-26850545)
               

               
               1-145, gnl|rheMac2|chr6 (85339734-85339995)
               

               
               1-145, gnl|rn3|chr2 (11837885-11837621)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr7 (56261560-56261703)
               

               
               1-145, gnl|canFam2|chr3 (22532007-22531741)
               

               
               1-145, gnl|dasNov1|scaffold_143369 (5438-5167)
               

               
               1-145, gnl|echTel1|scaffold_294286 (18398-18131)
               

               
               1-145, gnl|galGal2|chrW (888197-888470)
               

               
               1-145, gnl|hg17|chr5 (88385184-88385444)
               

               
               1-145, gnl|Hg17|chr5 (88385425-88385285)
               

               
               1-145, gnl|mm7|chr13 (80420840-80420576)
               

               
               1-145, gnl|Mm7|chr13 (80420592-80420736)
               

               
               1-145, gnl|panTro1|chr4 (26850805-26850545)
               

               
               1-145, gnl|rheMac2|chr6 (85339734-85339995)
               

               
               1-145, gnl|rn3|chr2 (11837885-11837621)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-145, gnl\|bosTau2\|chr7 (56261560-56261703)
	1-145, gnl\|canFam2\|chr3 (22532007-22531741)
	1-145, gnl\|dasNov1\|scaffold_143369 (5438-5167)
	1-145, gnl\|echTel1\|scaffold_294286 (18398-18131)
	1-145, gnl\|galGal2\|chrW (888197-888470)
	1-145, gnl\|hg17\|chr5 (88385184-88385444)
	1-145, gnl\|Hg17\|chr5 (88385425-88385285)
	1-145, gnl\|mm7\|chr13 (80420840-80420576)
	1-145, gnl\|Mm7\|chr13 (80420592-80420736)
	1-145, gnl\|panTro1\|chr4 (26850805-26850545)
	1-145, gnl\|rheMac2\|chr6 (85339734-85339995)
	1-145, gnl\|rn3\|chr2 (11837885-11837621)