Non-Coding RNA Search

risp24_l18.y1

Sequence:


               
               GTTTTTTTTTTTTTCTATCTTCCACATGCACCTACATAGTAGATGTTCTGCATATCTTGG
TTTTGAAGAGTAACTTGGCCAATCAAAACATAACCCAACAGGGATAGTGTTCTCTACAGA
TTTTTCTAAACCCAATCTATGTTCTTTGTATAAATATGGATTTTCTGCTACCCAATTGTC
ATTATTATTATTATTTCTAGTGTGGGGTATCAGAATTCATCAGCTGACTCTGTGTCCCAG
CCACAGGACTGTAGTTGTTCATCCTGTGGGAACTCTACTTCAATGTCATAAACAAAATTT
GGGTCGTCCTTCTTCTTCTGATTTTTCTCAAAAAGTTCATCCATGATGCTCTTCCTTTTG
GCAAGTTCCTTGTCATCTAGTTTGTTCAGGTCTTCCTCAGGATCAATGGTTGTTTCCCGT
TGAATTTGCTCCATTGTTTCTGCCAAACTCTGTCCCCACAAGTAACCTCGTAAAAAACTG
AATAACTTCTCTAGCTGCCTCATGGATACTTGCCTCGTGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTCTATCTTCCACATGCACCTACATAGTAGATGTTCTGCATATCTTGG
TTTTGAAGAGTAACTTGGCCAATCAAAACATAACCCAACAGGGATAGTGTTCTCTACAGA
TTTTTCTAAACCCAATCTATGTTCTTTGTATAAATATGGATTTTCTGCTACCCAATTGTC
ATTATTATTATTATTTCTAGTGTGGGGTATCAGAATTCATCAGCTGACTCTGTGTCCCAG
CCACAGGACTGTAGTTGTTCATCCTGTGGGAACTCTACTTCAATGTCATAAACAAAATTT
GGGTCGTCCTTCTTCTTCTGATTTTTCTCAAAAAGTTCATCCATGATGCTCTTCCTTTTG
GCAAGTTCCTTGTCATCTAGTTTGTTCAGGTCTTCCTCAGGATCAATGGTTGTTTCCCGT
TGAATTTGCTCCATTGTTTCTGCCAAACTCTGTCCCCACAAGTAACCTCGTAAAAAACTG
AATAACTTCTCTAGCTGCCTCATGGATACTTGCCTCGTGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14249664|ref|NP_116287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249664|ref|NP_116287.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-122, - strand, RNAz p=0.710203
               

               
               163-322, - strand, RNAz p=0.900557

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-122, - strand, RNAz p=0.710203
               

               
               163-322, - strand, RNAz p=0.900557

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_032898, -
               

               
               5' of NM_032898, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032898, -
               

               
               5' of NM_032898, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-512, gnl|bosTau2|chr1 (43385885-43386376)
               

               
               5-512, gnl|Hg17|chr3 (197922545-197923034)
               

               
               5-512, gnl|Mm7|chr16 (31781917-31781490)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-512, gnl|bosTau2|chr1 (43385885-43386376)
               

               
               5-512, gnl|Hg17|chr3 (197922545-197923034)
               

               
               5-512, gnl|Mm7|chr16 (31781917-31781490)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	5-122, - strand, RNAz p=0.710203
	163-322, - strand, RNAz p=0.900557

	5-512, gnl\|bosTau2\|chr1 (43385885-43386376)
	5-512, gnl\|Hg17\|chr3 (197922545-197923034)
	5-512, gnl\|Mm7\|chr16 (31781917-31781490)