Non-Coding RNA Search

risp26_d15.y1

Sequence:


               
               ATTTCGAGAGCTCTATGCTCTGGGCAGTGTCAATAATGACCTCTATGTCATAGGAGGACA
GATGAAAATTAAAAACCAGTATCTTATTACAAACTATGTTGATAAGTACTCTGCAGAACG
GGACAGTTGGAAAAGGGTGGCTCCCCTTCCACTACAATTGGCGTGTCATGCTGTAGTAAC
AGTGAATAATAAACTTTATGTGATTGGAGGCTGGACCCCTCAGATGGATCTTCCTGATGA
AGAGCCTGATCGATTAAGCAACAAGCTGCTGAAGTATGACCCCAGCCAAGATCAGTGGAC
AGAGCGGGCACCCATGCAGTATGCTAAGTACCGATTCAGTACAGCTGTGGTCAACAGTGA
GATTTATGTTTTGGGTAAGAGGAAGCTAAAAGAGTATAAGTACTTGTATTTTTCTCAGCA
GTTTGCCTCAGTGAAAATGAAATATTTTCTCCTCTTGCATCCCAGTTCAAATATATACAT
AACTAGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCGAGAGCTCTATGCTCTGGGCAGTGTCAATAATGACCTCTATGTCATAGGAGGACA
GATGAAAATTAAAAACCAGTATCTTATTACAAACTATGTTGATAAGTACTCTGCAGAACG
GGACAGTTGGAAAAGGGTGGCTCCCCTTCCACTACAATTGGCGTGTCATGCTGTAGTAAC
AGTGAATAATAAACTTTATGTGATTGGAGGCTGGACCCCTCAGATGGATCTTCCTGATGA
AGAGCCTGATCGATTAAGCAACAAGCTGCTGAAGTATGACCCCAGCCAAGATCAGTGGAC
AGAGCGGGCACCCATGCAGTATGCTAAGTACCGATTCAGTACAGCTGTGGTCAACAGTGA
GATTTATGTTTTGGGTAAGAGGAAGCTAAAAGAGTATAAGTACTTGTATTTTTCTCAGCA
GTTTGCCTCAGTGAAAATGAAATATTTTCTCCTCTTGCATCCCAGTTCAAATATATACAT
AACTAGCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-223, gnl|bosTau2|chr22 (46988205-46987983)
               

               
               1-223, gnl|canFam2|chr20 (4974350-4974591)
               

               
               1-223, gnl|danRer3|chr24 (16617763-16618008)
               

               
               1-223, gnl|dasNov1|scaffold_17598 (6510-6269)
               

               
               1-223, gnl|echTel1|scaffold_324308 (38806-38565)
               

               
               1-223, gnl|fr1|chrUn (198859670-198859424)
               

               
               1-223, gnl|galGal2|chr12 (9609213-9608978)
               

               
               1-223, gnl|hg17|chr3 (129129347-129129588)
               

               
               1-223, gnl|Hg17|chr3 (129129353-129129575)
               

               
               1-223, gnl|loxAfr1|scaffold_9564 (16285-16044)
               

               
               1-223, gnl|mm7|chr6 (88689217-88688976)
               

               
               1-223, gnl|Mm7|chr6 (88689209-88688987)
               

               
               1-223, gnl|monDom2|scaffold_5 (46413653-46413894)
               

               
               1-223, gnl|oryCun1|scaffold_164958 (3677-3442)
               

               
               1-223, gnl|panTro1|chr2 (131013528-131013769)
               

               
               1-223, gnl|rheMac2|chr11 (86919817-86919576)
               

               
               1-223, gnl|rn3|chr4 (122948984-122948742)
               

               
               1-223, gnl|tetNig1|chr11 (5296347-5296116)
               

               
               1-223, gnl|xenTro1|scaffold_72 (721690-721942)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr22 (46988205-46987983)
               

               
               1-223, gnl|canFam2|chr20 (4974350-4974591)
               

               
               1-223, gnl|danRer3|chr24 (16617763-16618008)
               

               
               1-223, gnl|dasNov1|scaffold_17598 (6510-6269)
               

               
               1-223, gnl|echTel1|scaffold_324308 (38806-38565)
               

               
               1-223, gnl|fr1|chrUn (198859670-198859424)
               

               
               1-223, gnl|galGal2|chr12 (9609213-9608978)
               

               
               1-223, gnl|hg17|chr3 (129129347-129129588)
               

               
               1-223, gnl|Hg17|chr3 (129129353-129129575)
               

               
               1-223, gnl|loxAfr1|scaffold_9564 (16285-16044)
               

               
               1-223, gnl|mm7|chr6 (88689217-88688976)
               

               
               1-223, gnl|Mm7|chr6 (88689209-88688987)
               

               
               1-223, gnl|monDom2|scaffold_5 (46413653-46413894)
               

               
               1-223, gnl|oryCun1|scaffold_164958 (3677-3442)
               

               
               1-223, gnl|panTro1|chr2 (131013528-131013769)
               

               
               1-223, gnl|rheMac2|chr11 (86919817-86919576)
               

               
               1-223, gnl|rn3|chr4 (122948984-122948742)
               

               
               1-223, gnl|tetNig1|chr11 (5296347-5296116)
               

               
               1-223, gnl|xenTro1|scaffold_72 (721690-721942)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               isp (0.150376)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-223, gnl\|bosTau2\|chr22 (46988205-46987983)
	1-223, gnl\|canFam2\|chr20 (4974350-4974591)
	1-223, gnl\|danRer3\|chr24 (16617763-16618008)
	1-223, gnl\|dasNov1\|scaffold_17598 (6510-6269)
	1-223, gnl\|echTel1\|scaffold_324308 (38806-38565)
	1-223, gnl\|fr1\|chrUn (198859670-198859424)
	1-223, gnl\|galGal2\|chr12 (9609213-9608978)
	1-223, gnl\|hg17\|chr3 (129129347-129129588)
	1-223, gnl\|Hg17\|chr3 (129129353-129129575)
	1-223, gnl\|loxAfr1\|scaffold_9564 (16285-16044)
	1-223, gnl\|mm7\|chr6 (88689217-88688976)
	1-223, gnl\|Mm7\|chr6 (88689209-88688987)
	1-223, gnl\|monDom2\|scaffold_5 (46413653-46413894)
	1-223, gnl\|oryCun1\|scaffold_164958 (3677-3442)
	1-223, gnl\|panTro1\|chr2 (131013528-131013769)
	1-223, gnl\|rheMac2\|chr11 (86919817-86919576)
	1-223, gnl\|rn3\|chr4 (122948984-122948742)
	1-223, gnl\|tetNig1\|chr11 (5296347-5296116)
	1-223, gnl\|xenTro1\|scaffold_72 (721690-721942)