Non-Coding RNA Search

risp35_p11.y1

Sequence:


               
               GGAGACCACCAGTCTTTTGCTTTGCATTGGTAACAATTCTTCAGGAATCAGGTCAAGACA
CAGGAACTACGGGGATGCCAGTTTTTGCTATGATCCTGCATCACGCAAGACCTATTTCAT
TTCATCTCCCAAGTATGGGGAGGGTTTAGGCACCGTGTGTACTGGTGTCGTCATGGAAAA
TAACACTATCATTGTGGCTGGTGAGGCAAGTGCCTCTAGACTCTCCAGACAAAAGAGCAA
GAATGTTGAAATCTATAGGTTTGTATCTAGCAGTATGCTTGCTAAGTCTGTTTTCATTGT
CTTGCTTTGACATTAGCAGCAGTGGAAGAAAGTCCTGCTGAGTGATAGCATCTTAAATTA
ACCTGTCATCACATATTTTTACATATAGGTAAAATTAATAATGAAGTCATCCACATTTTC
AAATTATTTTTTCTCTCCCTTTAATTGTTAAGAACATATAGTTGAATTTGCGTATGTTAA
ATGTATGGGTTTTATGATTCCACTGTATATTATCACTCTTAACTTTCATTATTTATTCAT
ATAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACCACCAGTCTTTTGCTTTGCATTGGTAACAATTCTTCAGGAATCAGGTCAAGACA
CAGGAACTACGGGGATGCCAGTTTTTGCTATGATCCTGCATCACGCAAGACCTATTTCAT
TTCATCTCCCAAGTATGGGGAGGGTTTAGGCACCGTGTGTACTGGTGTCGTCATGGAAAA
TAACACTATCATTGTGGCTGGTGAGGCAAGTGCCTCTAGACTCTCCAGACAAAAGAGCAA
GAATGTTGAAATCTATAGGTTTGTATCTAGCAGTATGCTTGCTAAGTCTGTTTTCATTGT
CTTGCTTTGACATTAGCAGCAGTGGAAGAAAGTCCTGCTGAGTGATAGCATCTTAAATTA
ACCTGTCATCACATATTTTTACATATAGGTAAAATTAATAATGAAGTCATCCACATTTTC
AAATTATTTTTTCTCTCCCTTTAATTGTTAAGAACATATAGTTGAATTTGCGTATGTTAA
ATGTATGGGTTTTATGATTCCACTGTATATTATCACTCTTAACTTTCATTATTTATTCAT
ATAACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               218-337, + strand, RNAz p=0.997736

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-337, + strand, RNAz p=0.997736

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-454, gnl|bosTau2|chr22 (46993190-46992751)
               

               
               1-454, gnl|canFam2|chr20 (4968956-4970033)
               

               
               1-454, gnl|danRer3|chr24 (16616051-16617095)
               

               
               1-454, gnl|dasNov1|scaffold_17598 (11369-10300)
               

               
               1-454, gnl|echTel1|scaffold_324308 (47348-46283)
               

               
               1-454, gnl|fr1|chrUn (198860846-198859770)
               

               
               1-454, gnl|galGal2|chr12 (9611157-9610068)
               

               
               1-454, gnl|hg17|chr3 (129124626-129125696)
               

               
               1-454, gnl|Hg17|chr3 (129125415-129125816)
               

               
               1-454, gnl|loxAfr1|scaffold_9564 (25435-24365)
               

               
               1-454, gnl|mm7|chr6 (88693924-88692854)
               

               
               1-454, gnl|monDom2|scaffold_5 (46409452-46410530)
               

               
               1-454, gnl|oryCun1|scaffold_164958 (8969-7902)
               

               
               1-454, gnl|panTro1|chr2 (131008812-131009882)
               

               
               1-454, gnl|rheMac2|chr11 (86924665-86923595)
               

               
               1-454, gnl|rn3|chr4 (122953755-122952684)
               

               
               1-454, gnl|tetNig1|chr11 (5297515-5296460)
               

               
               1-454, gnl|xenTro1|scaffold_72 (719559-720629)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr22 (46993190-46992751)
               

               
               1-454, gnl|canFam2|chr20 (4968956-4970033)
               

               
               1-454, gnl|danRer3|chr24 (16616051-16617095)
               

               
               1-454, gnl|dasNov1|scaffold_17598 (11369-10300)
               

               
               1-454, gnl|echTel1|scaffold_324308 (47348-46283)
               

               
               1-454, gnl|fr1|chrUn (198860846-198859770)
               

               
               1-454, gnl|galGal2|chr12 (9611157-9610068)
               

               
               1-454, gnl|hg17|chr3 (129124626-129125696)
               

               
               1-454, gnl|Hg17|chr3 (129125415-129125816)
               

               
               1-454, gnl|loxAfr1|scaffold_9564 (25435-24365)
               

               
               1-454, gnl|mm7|chr6 (88693924-88692854)
               

               
               1-454, gnl|monDom2|scaffold_5 (46409452-46410530)
               

               
               1-454, gnl|oryCun1|scaffold_164958 (8969-7902)
               

               
               1-454, gnl|panTro1|chr2 (131008812-131009882)
               

               
               1-454, gnl|rheMac2|chr11 (86924665-86923595)
               

               
               1-454, gnl|rn3|chr4 (122953755-122952684)
               

               
               1-454, gnl|tetNig1|chr11 (5297515-5296460)
               

               
               1-454, gnl|xenTro1|scaffold_72 (719559-720629)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-454, gnl\|bosTau2\|chr22 (46993190-46992751)
	1-454, gnl\|canFam2\|chr20 (4968956-4970033)
	1-454, gnl\|danRer3\|chr24 (16616051-16617095)
	1-454, gnl\|dasNov1\|scaffold_17598 (11369-10300)
	1-454, gnl\|echTel1\|scaffold_324308 (47348-46283)
	1-454, gnl\|fr1\|chrUn (198860846-198859770)
	1-454, gnl\|galGal2\|chr12 (9611157-9610068)
	1-454, gnl\|hg17\|chr3 (129124626-129125696)
	1-454, gnl\|Hg17\|chr3 (129125415-129125816)
	1-454, gnl\|loxAfr1\|scaffold_9564 (25435-24365)
	1-454, gnl\|mm7\|chr6 (88693924-88692854)
	1-454, gnl\|monDom2\|scaffold_5 (46409452-46410530)
	1-454, gnl\|oryCun1\|scaffold_164958 (8969-7902)
	1-454, gnl\|panTro1\|chr2 (131008812-131009882)
	1-454, gnl\|rheMac2\|chr11 (86924665-86923595)
	1-454, gnl\|rn3\|chr4 (122953755-122952684)
	1-454, gnl\|tetNig1\|chr11 (5297515-5296460)
	1-454, gnl\|xenTro1\|scaffold_72 (719559-720629)