Non-Coding RNA Search

risp38_g17.y1

Sequence:


               
               ATTTTAAAAAACACCAAAGTGATTTAAAAAAATATGGAACTTCTCACTCTAGTAACAATA
TGTTTAAATCATGTTGTTTGTTGATTAAATATTTAAAACATTGTTAACTTTTGCTAGAAT
ATTTTAAATCATGAAAGTGTTGGGAAGGGGATATCAAAGTATGAAATTATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAAAAAACACCAAAGTGATTTAAAAAAATATGGAACTTCTCACTCTAGTAACAATA
TGTTTAAATCATGTTGTTTGTTGATTAAATATTTAAAACATTGTTAACTTTTGCTAGAAT
ATTTTAAATCATGAAAGTGTTGGGAAGGGGATATCAAAGTATGAAATTATGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-148, - strand, RNAz p=0.938575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-148, - strand, RNAz p=0.938575

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-173, gnl|bosTau2|chr4 (17481233-17481405)
               

               
               1-173, gnl|canFam2|chr18 (24550175-24550345)
               

               
               1-173, gnl|dasNov1|scaffold_74962 (11015-11185)
               

               
               1-173, gnl|echTel1|scaffold_298593 (43959-44108)
               

               
               1-173, gnl|hg17|chr7 (81222137-81222309)
               

               
               1-173, gnl|Hg17|chr7 (81222310-81222135)
               

               
               1-173, gnl|loxAfr1|scaffold_31648 (20379-20197)
               

               
               1-173, gnl|mm7|chr5 (15380601-15380469)
               

               
               1-173, gnl|monDom2|scaffold_30 (22268474-22268325)
               

               
               1-173, gnl|oryCun1|scaffold_198249 (56641-56472)
               

               
               1-173, gnl|panTro1|chr6 (82454033-82454210)
               

               
               1-173, gnl|rheMac2|chr3 (135317673-135317504)
               

               
               1-173, gnl|rn3|chr4 (15138086-15138220)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-173, gnl|bosTau2|chr4 (17481233-17481405)
               

               
               1-173, gnl|canFam2|chr18 (24550175-24550345)
               

               
               1-173, gnl|dasNov1|scaffold_74962 (11015-11185)
               

               
               1-173, gnl|echTel1|scaffold_298593 (43959-44108)
               

               
               1-173, gnl|hg17|chr7 (81222137-81222309)
               

               
               1-173, gnl|Hg17|chr7 (81222310-81222135)
               

               
               1-173, gnl|loxAfr1|scaffold_31648 (20379-20197)
               

               
               1-173, gnl|mm7|chr5 (15380601-15380469)
               

               
               1-173, gnl|monDom2|scaffold_30 (22268474-22268325)
               

               
               1-173, gnl|oryCun1|scaffold_198249 (56641-56472)
               

               
               1-173, gnl|panTro1|chr6 (82454033-82454210)
               

               
               1-173, gnl|rheMac2|chr3 (135317673-135317504)
               

               
               1-173, gnl|rn3|chr4 (15138086-15138220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	1-173, gnl\|bosTau2\|chr4 (17481233-17481405)
	1-173, gnl\|canFam2\|chr18 (24550175-24550345)
	1-173, gnl\|dasNov1\|scaffold_74962 (11015-11185)
	1-173, gnl\|echTel1\|scaffold_298593 (43959-44108)
	1-173, gnl\|hg17\|chr7 (81222137-81222309)
	1-173, gnl\|Hg17\|chr7 (81222310-81222135)
	1-173, gnl\|loxAfr1\|scaffold_31648 (20379-20197)
	1-173, gnl\|mm7\|chr5 (15380601-15380469)
	1-173, gnl\|monDom2\|scaffold_30 (22268474-22268325)
	1-173, gnl\|oryCun1\|scaffold_198249 (56641-56472)
	1-173, gnl\|panTro1\|chr6 (82454033-82454210)
	1-173, gnl\|rheMac2\|chr3 (135317673-135317504)
	1-173, gnl\|rn3\|chr4 (15138086-15138220)