Non-Coding RNA Search

risp39_k15.y1

Sequence:


               
               ATAGCACCAATTCAATCCCTAGCCTGGGAACCTCCATATGCCATGGTGTGCAGCCCTAAA
AAAAAAGACAAAAAAAAAAAAATAGACTGCAAAACCTATTATGTATATTCAAACTTTAAA
CACATTTTATAACAAAATTAGTAAATTCTTTCTCTTGAATATTTTATCCTGCCATTAGTA
CAACATATTTTTGAACGATGTATATTCAAACAAAACTCCTACTTCAGAAAAATGTATTCA
AGACTAGACCAAAAGAAATCTACATCACACTCACAAAAGACTCATACTCTTTCCTTTACA
GTTATTTCTAATTTCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGCACCAATTCAATCCCTAGCCTGGGAACCTCCATATGCCATGGTGTGCAGCCCTAAA
AAAAAAGACAAAAAAAAAAAAATAGACTGCAAAACCTATTATGTATATTCAAACTTTAAA
CACATTTTATAACAAAATTAGTAAATTCTTTCTCTTGAATATTTTATCCTGCCATTAGTA
CAACATATTTTTGAACGATGTATATTCAAACAAAACTCCTACTTCAGAAAAATGTATTCA
AGACTAGACCAAAAGAAATCTACATCACACTCACAAAAGACTCATACTCTTTCCTTTACA
GTTATTTCTAATTTCATTTT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               86-320, gnl|bosTau2|chr21 (27250556-27250790)
               

               
               86-320, gnl|canFam2|chr8 (12011286-12011473)
               

               
               86-320, gnl|dasNov1|scaffold_1930 (29084-28899)
               

               
               86-320, gnl|echTel1|scaffold_290509 (70574-70379)
               

               
               86-320, gnl|hg17|chr14 (29117489-29117699)
               

               
               86-320, gnl|Hg17|chr14 (29117759-29117504)
               

               
               86-320, gnl|mm7|chr12 (48349997-48350148)
               

               
               86-320, gnl|monDom2|scaffold_53 (1714229-1714419)
               

               
               86-320, gnl|oryCun1|scaffold_139395 (4046-3837)
               

               
               86-320, gnl|panTro1|chr15 (28251377-28251592)
               

               
               86-320, gnl|rheMac2|chr7 (92492356-92492538)
               

               
               86-320, gnl|rn3|chr6 (70368586-70368735)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-320, gnl|bosTau2|chr21 (27250556-27250790)
               

               
               86-320, gnl|canFam2|chr8 (12011286-12011473)
               

               
               86-320, gnl|dasNov1|scaffold_1930 (29084-28899)
               

               
               86-320, gnl|echTel1|scaffold_290509 (70574-70379)
               

               
               86-320, gnl|hg17|chr14 (29117489-29117699)
               

               
               86-320, gnl|Hg17|chr14 (29117759-29117504)
               

               
               86-320, gnl|mm7|chr12 (48349997-48350148)
               

               
               86-320, gnl|monDom2|scaffold_53 (1714229-1714419)
               

               
               86-320, gnl|oryCun1|scaffold_139395 (4046-3837)
               

               
               86-320, gnl|panTro1|chr15 (28251377-28251592)
               

               
               86-320, gnl|rheMac2|chr7 (92492356-92492538)
               

               
               86-320, gnl|rn3|chr6 (70368586-70368735)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               isp (0.150376)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)

	86-320, gnl\|bosTau2\|chr21 (27250556-27250790)
	86-320, gnl\|canFam2\|chr8 (12011286-12011473)
	86-320, gnl\|dasNov1\|scaffold_1930 (29084-28899)
	86-320, gnl\|echTel1\|scaffold_290509 (70574-70379)
	86-320, gnl\|hg17\|chr14 (29117489-29117699)
	86-320, gnl\|Hg17\|chr14 (29117759-29117504)
	86-320, gnl\|mm7\|chr12 (48349997-48350148)
	86-320, gnl\|monDom2\|scaffold_53 (1714229-1714419)
	86-320, gnl\|oryCun1\|scaffold_139395 (4046-3837)
	86-320, gnl\|panTro1\|chr15 (28251377-28251592)
	86-320, gnl\|rheMac2\|chr7 (92492356-92492538)
	86-320, gnl\|rn3\|chr6 (70368586-70368735)