rjca02c_f22.y1
|
CGCTGGTCGCCACCTCCCCACCCAGCCACAGTCACATGGAGGATGAGATCTTCAACCAGT
CAAGCAGCACGCCCACCTCCACCACCTCCAGCTCGCCCATCCCACCCAGCCCGGCCAACT
GCACCACGGAAAACTCTGAAGATGACAAGAAGAGGGGACGCTCGACGGATAGTGAAGTCA
GCCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCC
CAGCCGTGCCGCCAAGCTACCCCTCCGGCCCCCCGCCTACCGCCTCTGCCCTGAGCACCA
CCCCTGGCAACAATGGGGCCCCTGCCCCAGCAGCACCCGCAAGTGCCCTGGGCCCCAAGG
CCAGCCCAGCTCCCAGCCACAACTCGGGCACCCCGGCCCCCTATGCCCAGGCTGTGGCCC
CGCCAGC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CGCTGGTCGCCACCTCCCCACCCAGCCACAGTCACATGGAGGATGAGATCTTCAACCAGT
CAAGCAGCACGCCCACCTCCACCACCTCCAGCTCGCCCATCCCACCCAGCCCGGCCAACT
GCACCACGGAAAACTCTGAAGATGACAAGAAGAGGGGACGCTCGACGGATAGTGAAGTCA
GCCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCAGTCCC
CAGCCGTGCCGCCAAGCTACCCCTCCGGCCCCCCGCCTACCGCCTCTGCCCTGAGCACCA
CCCCTGGCAACAATGGGGCCCCTGCCCCAGCAGCACCCGCAAGTGCCCTGGGCCCCAAGG
CCAGCCCAGCTCCCAGCCACAACTCGGGCACCCCGGCCCCCTATGCCCAGGCTGTGGCCC
CGCCAGC
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-129, gnl|bosTau2|chr18 (56093279-56093407) |
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1-129, gnl|canFam2|chr1 (106140060-106139918) |
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1-129, gnl|danRer3|chr19 (4382023-4382160) |
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1-129, gnl|echTel1|scaffold_284539 (35541-35684) |
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1-129, gnl|fr1|chrUn (200912823-200912965) |
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1-129, gnl|hg17|chr19 (59341454-59341597) |
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1-129, gnl|Hg17|chr19 (59341464-59341592) |
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1-129, gnl|loxAfr1|scaffold_122572 (4237-4380) |
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1-129, gnl|mm7|chr7 (3276466-3276609) |
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1-129, gnl|Mm7|chr7 (3276476-3276604) |
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1-129, gnl|monDom2|scaffold_191 (1314261-1314118) |
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1-129, gnl|oryCun1|scaffold_160673 (9319-9176) |
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1-129, gnl|panTro1|chr20 (56784302-56784445) |
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1-129, gnl|rheMac2|chr19 (60247371-60247514) |
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1-129, gnl|rn3|chr1 (63953574-63953431) |
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1-129, gnl|tetNig1|chr8 (8533581-8533438) |
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1-129, gnl|xenTro1|scaffold_374 (175150-175293) |
| |
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183-427, gnl|bosTau2|chr18 (56095601-56095845) |
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183-427, gnl|Hg17|chr19 (59343692-59343936) |
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183-427, gnl|Mm7|chr7 (3278527-3278771) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-129, gnl|bosTau2|chr18 (56093279-56093407) |
|
1-129, gnl|canFam2|chr1 (106140060-106139918) |
|
1-129, gnl|danRer3|chr19 (4382023-4382160) |
|
1-129, gnl|echTel1|scaffold_284539 (35541-35684) |
|
1-129, gnl|fr1|chrUn (200912823-200912965) |
|
1-129, gnl|hg17|chr19 (59341454-59341597) |
|
1-129, gnl|Hg17|chr19 (59341464-59341592) |
|
1-129, gnl|loxAfr1|scaffold_122572 (4237-4380) |
|
1-129, gnl|mm7|chr7 (3276466-3276609) |
|
1-129, gnl|Mm7|chr7 (3276476-3276604) |
|
1-129, gnl|monDom2|scaffold_191 (1314261-1314118) |
|
1-129, gnl|oryCun1|scaffold_160673 (9319-9176) |
|
1-129, gnl|panTro1|chr20 (56784302-56784445) |
|
1-129, gnl|rheMac2|chr19 (60247371-60247514) |
|
1-129, gnl|rn3|chr1 (63953574-63953431) |
|
1-129, gnl|tetNig1|chr8 (8533581-8533438) |
|
1-129, gnl|xenTro1|scaffold_374 (175150-175293) |
| |
|
183-427, gnl|bosTau2|chr18 (56095601-56095845) |
|
183-427, gnl|Hg17|chr19 (59343692-59343936) |
|
183-427, gnl|Mm7|chr7 (3278527-3278771) |
