Non-Coding RNA Search

rjca05c_l23.y1

Sequence:


               
               CACACAGTTACTGTGGATTTTTAAGAGACTCAGTTTAAGACTTAAGGAATTTCTGATTCA
TTTACAGGATTTGCAAACTCATCAACCCCTGAAAACTAAAGCAAACTCAACAGGCCAAAA
AAGGAACATGGGCTTCTCAAGTCCAGTGTGTGTCCTTCTCTTCTTTCTTGGAGTCAAAGT
ATATTGTCAGTATGAAAGTTATCAGTGGGATGAAGATTATGACCAAGAACCAGATGATGT
CTACCAACCGGAATTCCAATTTCGTCAAAATGTAGACTACAGAGTTCCATTTCCTCAGCA
TACTTTAGGCTGTCCCAGTGAATGCTTCTGTCCACCTAACTTTCCATCATCAATGTACTG
TGATAATCGCAAACTCAAGACTATCCCAAATATTCCACCATACATTCAACAAGTCTATCT
TCAGTTCAATGAAATAGAGGCTGTGACTGCAGATTCATTCATCAATGCCACTCATCTTAA
AGAAATCAACCTCAGCCACAACAAAATTAAATCTCAAAAGATGGATCATGGTGTGTTTGC
CAAACTGTCAAATCTACTACAACTTCATCTACACCATAACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACAGTTACTGTGGATTTTTAAGAGACTCAGTTTAAGACTTAAGGAATTTCTGATTCA
TTTACAGGATTTGCAAACTCATCAACCCCTGAAAACTAAAGCAAACTCAACAGGCCAAAA
AAGGAACATGGGCTTCTCAAGTCCAGTGTGTGTCCTTCTCTTCTTTCTTGGAGTCAAAGT
ATATTGTCAGTATGAAAGTTATCAGTGGGATGAAGATTATGACCAAGAACCAGATGATGT
CTACCAACCGGAATTCCAATTTCGTCAAAATGTAGACTACAGAGTTCCATTTCCTCAGCA
TACTTTAGGCTGTCCCAGTGAATGCTTCTGTCCACCTAACTTTCCATCATCAATGTACTG
TGATAATCGCAAACTCAAGACTATCCCAAATATTCCACCATACATTCAACAAGTCTATCT
TCAGTTCAATGAAATAGAGGCTGTGACTGCAGATTCATTCATCAATGCCACTCATCTTAA
AGAAATCAACCTCAGCCACAACAAAATTAAATCTCAAAAGATGGATCATGGTGTGTTTGC
CAAACTGTCAAATCTACTACAACTTCATCTACACCATAACAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-307, - strand, RNAz p=0.834476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, - strand, RNAz p=0.834476

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               109-583, gnl|bosTau2|chr28 (16158648-16159122)
               

               
               109-583, gnl|canFam2|chr1 (101998909-101998543)
               

               
               109-583, gnl|danRer3|chr6 (30573574-30573942)
               

               
               109-583, gnl|dasNov1|scaffold_9743 (31068-31434)
               

               
               109-583, gnl|echTel1|scaffold_279817 (51578-51212)
               

               
               109-583, gnl|fr1|chrUn (90869163-90869516)
               

               
               109-583, gnl|galGal2|chr12 (3479898-3479532)
               

               
               109-583, gnl|hg17|chr9 (92258864-92259230)
               

               
               109-583, gnl|Hg17|chr9 (92259416-92258940)
               

               
               109-583, gnl|loxAfr1|scaffold_1174 (15491-15125)
               

               
               109-583, gnl|mm7|chr13 (49073886-49073520)
               

               
               109-583, gnl|Mm7|chr13 (49073334-49073808)
               

               
               109-583, gnl|monDom2|scaffold_34 (25616175-25615806)
               

               
               109-583, gnl|oryCun1|scaffold_178118 (851-485)
               

               
               109-583, gnl|panTro1|chrUn_random (27814975-27815341)
               

               
               109-583, gnl|rheMac2|chr15 (104321170-104321536)
               

               
               109-583, gnl|rn3|chr17 (21016885-21017251)
               

               
               109-583, gnl|tetNig1|chr19 (1843168-1843521)
               

               
               109-583, gnl|xenTro1|scaffold_425 (363221-363590)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-583, gnl|bosTau2|chr28 (16158648-16159122)
               

               
               109-583, gnl|canFam2|chr1 (101998909-101998543)
               

               
               109-583, gnl|danRer3|chr6 (30573574-30573942)
               

               
               109-583, gnl|dasNov1|scaffold_9743 (31068-31434)
               

               
               109-583, gnl|echTel1|scaffold_279817 (51578-51212)
               

               
               109-583, gnl|fr1|chrUn (90869163-90869516)
               

               
               109-583, gnl|galGal2|chr12 (3479898-3479532)
               

               
               109-583, gnl|hg17|chr9 (92258864-92259230)
               

               
               109-583, gnl|Hg17|chr9 (92259416-92258940)
               

               
               109-583, gnl|loxAfr1|scaffold_1174 (15491-15125)
               

               
               109-583, gnl|mm7|chr13 (49073886-49073520)
               

               
               109-583, gnl|Mm7|chr13 (49073334-49073808)
               

               
               109-583, gnl|monDom2|scaffold_34 (25616175-25615806)
               

               
               109-583, gnl|oryCun1|scaffold_178118 (851-485)
               

               
               109-583, gnl|panTro1|chrUn_random (27814975-27815341)
               

               
               109-583, gnl|rheMac2|chr15 (104321170-104321536)
               

               
               109-583, gnl|rn3|chr17 (21016885-21017251)
               

               
               109-583, gnl|tetNig1|chr19 (1843168-1843521)
               

               
               109-583, gnl|xenTro1|scaffold_425 (363221-363590)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	109-583, gnl\|bosTau2\|chr28 (16158648-16159122)
	109-583, gnl\|canFam2\|chr1 (101998909-101998543)
	109-583, gnl\|danRer3\|chr6 (30573574-30573942)
	109-583, gnl\|dasNov1\|scaffold_9743 (31068-31434)
	109-583, gnl\|echTel1\|scaffold_279817 (51578-51212)
	109-583, gnl\|fr1\|chrUn (90869163-90869516)
	109-583, gnl\|galGal2\|chr12 (3479898-3479532)
	109-583, gnl\|hg17\|chr9 (92258864-92259230)
	109-583, gnl\|Hg17\|chr9 (92259416-92258940)
	109-583, gnl\|loxAfr1\|scaffold_1174 (15491-15125)
	109-583, gnl\|mm7\|chr13 (49073886-49073520)
	109-583, gnl\|Mm7\|chr13 (49073334-49073808)
	109-583, gnl\|monDom2\|scaffold_34 (25616175-25615806)
	109-583, gnl\|oryCun1\|scaffold_178118 (851-485)
	109-583, gnl\|panTro1\|chrUn_random (27814975-27815341)
	109-583, gnl\|rheMac2\|chr15 (104321170-104321536)
	109-583, gnl\|rn3\|chr17 (21016885-21017251)
	109-583, gnl\|tetNig1\|chr19 (1843168-1843521)
	109-583, gnl\|xenTro1\|scaffold_425 (363221-363590)