rjca05c_n15.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGGCTGCGTCCCCGCGCCCCCATCCCCGGCGGTTCCTATCACGCCTGGGTCTCCCTC CGACCGGGCCCCAGAGCCCTGAGTGTGGTTCGGGCCTGGTGCCCGCCTGGCTTCATCCGG CAGAACGGCATCTGCACAGACCTGGACGAGTGTCAGGTGGGGAACCTGTGCCAGCACGCC TGCCGGAACACCGAGGGCAGCTACCAGTGCCTCTGCCCCGCGGGCTACCGCCTCCTCCCC AGCGGGAAGAACTGCCAGGACATCAACGAGTGTGAGGAGGATGGCATCGAGTGTGGGCCC AGCCAGATGTGTTTCAACACCCGTGGCAGCTACCAGTGTGTGGACACGCCATGTCCTGCC ACCTACCGGCAGGGCTCCAGCCCCGGGACATGCTTCCGGCGCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGGCTGCGTCCCCGCGCCCCCATCCCCGGCGGTTCCTATCACGCCTGGGTCTCCCTC CGACCGGGCCCCAGAGCCCTGAGTGTGGTTCGGGCCTGGTGCCCGCCTGGCTTCATCCGG CAGAACGGCATCTGCACAGACCTGGACGAGTGTCAGGTGGGGAACCTGTGCCAGCACGCC TGCCGGAACACCGAGGGCAGCTACCAGTGCCTCTGCCCCGCGGGCTACCGCCTCCTCCCC AGCGGGAAGAACTGCCAGGACATCAACGAGTGTGAGGAGGATGGCATCGAGTGTGGGCCC AGCCAGATGTGTTTCAACACCCGTGGCAGCTACCAGTGTGTGGACACGCCATGTCCTGCC ACCTACCGGCAGGGCTCCAGCCCCGGGACATGCTTCCGGCGCTGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-117, - strand, RNAz p=0.557619 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-117, - strand, RNAz p=0.557619 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-139, gnl|bosTau2|chr11 (81055272-81055409) | |
| 2-139, gnl|canFam2|chr9 (56834632-56834486) | |
| 2-139, gnl|echTel1|scaffold_60739 (290-141) | |
| 2-139, gnl|fr1|chrUn (175351599-175351742) | |
| 2-139, gnl|hg17|chr9 (130335359-130335505) | |
| 2-139, gnl|Hg17|chr9 (130335405-130335545) | |
| 2-139, gnl|loxAfr1|scaffold_167323 (4576-4723) | |
| 2-139, gnl|mm7|chr2 (31465178-31465324) | |
| 2-139, gnl|Mm7|chr2 (31465224-31465364) | |
| 2-139, gnl|monDom2|scaffold_51 (5600610-5600756) | |
| 2-139, gnl|oryCun1|scaffold_117733 (3200-3054) | |
| 2-139, gnl|panTro1|chr11 (115211721-115211867) | |
| 2-139, gnl|rheMac2|chr15 (8397282-8397136) | |
| 2-139, gnl|rn3|chr3 (10457615-10457761) | |
| 2-139, gnl|xenTro1|scaffold_983 (214093-213953) | |
| 252-387, gnl|bosTau2|chr11 (81057451-81057586) | |
| 252-387, gnl|canFam2|chr9 (56832885-56832769) | |
| 252-387, gnl|danRer3|chr20 (42781270-42781164) | |
| 252-387, gnl|echTel1|scaffold_315603 (66591-66484) | |
| 252-387, gnl|fr1|chrUn (47352451-47352335) | |
| 252-387, gnl|hg17|chr9 (130337358-130337474) | |
| 252-387, gnl|Hg17|chr9 (130337362-130337497) | |
| 252-387, gnl|mm7|chr2 (31466381-31466496) | |
| 252-387, gnl|Mm7|chr2 (31466384-31466519) | |
| 252-387, gnl|monDom2|scaffold_51 (5604885-5605000) | |
| 252-387, gnl|oryCun1|scaffold_180201 (179696-179812) | |
| 252-387, gnl|panTro1|chr11 (115213720-115213836) | |
| 252-387, gnl|rheMac2|chr15 (8395060-8394944) | |
| 252-387, gnl|rn3|chr3 (10458773-10458888) | |
| 252-387, gnl|tetNig1|chr1 (15423197-15423092) | |
| 252-387, gnl|xenTro1|scaffold_983 (212726-212609) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-139, gnl|bosTau2|chr11 (81055272-81055409) | |
| 2-139, gnl|canFam2|chr9 (56834632-56834486) | |
| 2-139, gnl|echTel1|scaffold_60739 (290-141) | |
| 2-139, gnl|fr1|chrUn (175351599-175351742) | |
| 2-139, gnl|hg17|chr9 (130335359-130335505) | |
| 2-139, gnl|Hg17|chr9 (130335405-130335545) | |
| 2-139, gnl|loxAfr1|scaffold_167323 (4576-4723) | |
| 2-139, gnl|mm7|chr2 (31465178-31465324) | |
| 2-139, gnl|Mm7|chr2 (31465224-31465364) | |
| 2-139, gnl|monDom2|scaffold_51 (5600610-5600756) | |
| 2-139, gnl|oryCun1|scaffold_117733 (3200-3054) | |
| 2-139, gnl|panTro1|chr11 (115211721-115211867) | |
| 2-139, gnl|rheMac2|chr15 (8397282-8397136) | |
| 2-139, gnl|rn3|chr3 (10457615-10457761) | |
| 2-139, gnl|xenTro1|scaffold_983 (214093-213953) | |
| 252-387, gnl|bosTau2|chr11 (81057451-81057586) | |
| 252-387, gnl|canFam2|chr9 (56832885-56832769) | |
| 252-387, gnl|danRer3|chr20 (42781270-42781164) | |
| 252-387, gnl|echTel1|scaffold_315603 (66591-66484) | |
| 252-387, gnl|fr1|chrUn (47352451-47352335) | |
| 252-387, gnl|hg17|chr9 (130337358-130337474) | |
| 252-387, gnl|Hg17|chr9 (130337362-130337497) | |
| 252-387, gnl|mm7|chr2 (31466381-31466496) | |
| 252-387, gnl|Mm7|chr2 (31466384-31466519) | |
| 252-387, gnl|monDom2|scaffold_51 (5604885-5605000) | |
| 252-387, gnl|oryCun1|scaffold_180201 (179696-179812) | |
| 252-387, gnl|panTro1|chr11 (115213720-115213836) | |
| 252-387, gnl|rheMac2|chr15 (8395060-8394944) | |
| 252-387, gnl|rn3|chr3 (10458773-10458888) | |
| 252-387, gnl|tetNig1|chr1 (15423197-15423092) | |
| 252-387, gnl|xenTro1|scaffold_983 (212726-212609) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |