Non-Coding RNA Search

rjca07c_h5.y1

Sequence:


               
               CTTATGCCACATATAATAGCAAATGGCTTTTTTTATGGCATGCATAACCTAGATGGGAAA
AAATATGGCGCTTCGGGGAAGGAGGGAAAAAGTAAATGAAGTTCCAGGAATGTCATTCTG
AAGTAATGAGGCATGGACAGAAAATATACCCCTCACATCATCGGATTGAGATGGCAGTCG
AAATAGCTTCATGGAAGTGTCAGCACGCATCCATCAATCAATCACCCACAAGGAAAAATA
GCAACAGTACAACCGGGCGGCTTTTATGGGATTTACTCATGGGCATAGGGAATAGCAGCT
CAAATGTAGTTCTGACATGAAAAGCAAGGTGCTGATATTATTTTTTATGATGGGAGGATC
ATAAAGTGAATGGAGAACAGCGAGGTCTGTCTTGGCTTAACCTATTCAACCAGAAATGAA
TGGCGCTCAACTGGAAAGGAACAGTCTTCGGATGGGTTAAGATTGAAGGGTGGACCCTTC
TGAGCACTGTCCTTCGACAACGAAATTCTATTAAAGGAAAATCAAGGCATTAGCATGGGG
GTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTATGCCACATATAATAGCAAATGGCTTTTTTTATGGCATGCATAACCTAGATGGGAAA
AAATATGGCGCTTCGGGGAAGGAGGGAAAAAGTAAATGAAGTTCCAGGAATGTCATTCTG
AAGTAATGAGGCATGGACAGAAAATATACCCCTCACATCATCGGATTGAGATGGCAGTCG
AAATAGCTTCATGGAAGTGTCAGCACGCATCCATCAATCAATCACCCACAAGGAAAAATA
GCAACAGTACAACCGGGCGGCTTTTATGGGATTTACTCATGGGCATAGGGAATAGCAGCT
CAAATGTAGTTCTGACATGAAAAGCAAGGTGCTGATATTATTTTTTATGATGGGAGGATC
ATAAAGTGAATGGAGAACAGCGAGGTCTGTCTTGGCTTAACCTATTCAACCAGAAATGAA
TGGCGCTCAACTGGAAAGGAACAGTCTTCGGATGGGTTAAGATTGAAGGGTGGACCCTTC
TGAGCACTGTCCTTCGACAACGAAATTCTATTAAAGGAAAATCAAGGCATTAGCATGGGG
GTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8571366|gb|AAF76850.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8571366|gb|AAF76850.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-511, + strand, RNAz p=0.679043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-511, + strand, RNAz p=0.679043

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF230201, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF230201, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-544, gnl|bosTau2|chr13 (62137770-62138312)
               

               
               1-544, gnl|Hg17|chr20 (51538829-51539377)
               

               
               1-544, gnl|Mm7|chr2 (169864650-169865206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-544, gnl|bosTau2|chr13 (62137770-62138312)
               

               
               1-544, gnl|Hg17|chr20 (51538829-51539377)
               

               
               1-544, gnl|Mm7|chr2 (169864650-169865206)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-544, gnl\|bosTau2\|chr13 (62137770-62138312)
	1-544, gnl\|Hg17\|chr20 (51538829-51539377)
	1-544, gnl\|Mm7\|chr2 (169864650-169865206)