Non-Coding RNA Search

rjca09c_c18.y1

Sequence:


               
               CTTCTGCAGCCCACCTAGTTTTTCCTACCGAGGAGAGGAGACCCGCCACTCAGGCCTAAA
GCCTGGTCCCAGAGCAGACCGTTCCGAGGTGGAAGACATCAAAAATCCAAGAGGCTGCAC
CCAGGCCGCCGGCCGCCGAGATCTCTTCAGGAAATGCCTGTGGAGCCCAGCAGCTTGGCA
AAGTCTACACCACACTTCATTCAAGCGGGGATTTGCTCGGTGGAGCAGCGGGCCTGGCCA
GCAGTCCCAGCTCTGAGGGGGCTCAAGTCCCCCACACACCCAGTTCCTGTACCATACTCT
GCCCTTCACCACCTCAGAACTGAGCTTGGAAGCTTCTGGTGACCTTCCAAGAGCTCCAGA
GTGATTTGGAATTATTTTAAAAGATAAATATATTATATATATATATATTTCCCTGCAGGA
ACCAAAGCGAATTTTAAAAGATGCAATGTGGGGGGGGGGAGATGATGAAGAAAATATTTA
AAGGCTCTATCTGTTTACAGTGTCCCATGGTTAAACTCACTCACTGCTAAGAATATTTGA
ATGTACACTTCATACAGGGATGGTGTTCAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGCAGCCCACCTAGTTTTTCCTACCGAGGAGAGGAGACCCGCCACTCAGGCCTAAA
GCCTGGTCCCAGAGCAGACCGTTCCGAGGTGGAAGACATCAAAAATCCAAGAGGCTGCAC
CCAGGCCGCCGGCCGCCGAGATCTCTTCAGGAAATGCCTGTGGAGCCCAGCAGCTTGGCA
AAGTCTACACCACACTTCATTCAAGCGGGGATTTGCTCGGTGGAGCAGCGGGCCTGGCCA
GCAGTCCCAGCTCTGAGGGGGCTCAAGTCCCCCACACACCCAGTTCCTGTACCATACTCT
GCCCTTCACCACCTCAGAACTGAGCTTGGAAGCTTCTGGTGACCTTCCAAGAGCTCCAGA
GTGATTTGGAATTATTTTAAAAGATAAATATATTATATATATATATATTTCCCTGCAGGA
ACCAAAGCGAATTTTAAAAGATGCAATGTGGGGGGGGGGAGATGATGAAGAAAATATTTA
AAGGCTCTATCTGTTTACAGTGTCCCATGGTTAAACTCACTCACTGCTAAGAATATTTGA
ATGTACACTTCATACAGGGATGGTGTTCAAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-104, - strand, RNAz p=0.818107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-104, - strand, RNAz p=0.818107

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-574, gnl|bosTau2|chr4 (40160125-40160711)
               

               
               1-574, gnl|Hg17|chr7 (26995006-26994400)
               

               
               1-574, gnl|Mm7|chr6 (52206083-52205500)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-574, gnl|bosTau2|chr4 (40160125-40160711)
               

               
               1-574, gnl|Hg17|chr7 (26995006-26994400)
               

               
               1-574, gnl|Mm7|chr6 (52206083-52205500)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-574, gnl\|bosTau2\|chr4 (40160125-40160711)
	1-574, gnl\|Hg17\|chr7 (26995006-26994400)
	1-574, gnl\|Mm7\|chr6 (52206083-52205500)