Non-Coding RNA Search

rjca09c_n22.y1

Sequence:


               
               CAGacagacacatacacacacacacacacacacacacacacacacGTCCCCTTACAACCT
CTTGGTCACAGGCAAAAGGAACAGGAGGTTGTCTGGGGTCCTGCCTCTCTCCTAACTTTC
TCCTCTCCCCTGGGCATCCTCAGCCCCTACTTTAATTCTGGATCATGTAAGAATTGTTTT
GGGTAAATGTTGATATTATTGTTATTATTGTTATTATTATTAATAAATAAAAGCAAAAAG
AATTTTGGTTTAAAAGAGAAATGTTTAACCAGATTCTGTTCTATTTGAATTGTGACTTGC
ACCTTTGGTTCAAAGTATTTTATTTAGCTCTTGTAATTGTGAACAGTTCTCCTTGTGCCA
GTGACAGATGTAGTGGACTCCTTTCCCAGCTGAAGCAGTGCATATGCAACAGCCATCATT
CGTGTCCTTATCTTTATTTCTCTTCGCTGTTAGAAACCAAAGTCTTCTCTGCAGGCTGGG
GGTTGACAGAGGATCTGGGTTCTCTCCTTCTGATCTTCAAAACAAGAAAGAAATGTTAAA
TATTCTGACTCTTAATTTGTTTCTCTGGGAAAGCGGAGGGGAAGGTCTCTCGGCCCCTTT
CATCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGacagacacatacacacacacacacacacacacacacacacacGTCCCCTTACAACCT
CTTGGTCACAGGCAAAAGGAACAGGAGGTTGTCTGGGGTCCTGCCTCTCTCCTAACTTTC
TCCTCTCCCCTGGGCATCCTCAGCCCCTACTTTAATTCTGGATCATGTAAGAATTGTTTT
GGGTAAATGTTGATATTATTGTTATTATTGTTATTATTATTAATAAATAAAAGCAAAAAG
AATTTTGGTTTAAAAGAGAAATGTTTAACCAGATTCTGTTCTATTTGAATTGTGACTTGC
ACCTTTGGTTCAAAGTATTTTATTTAGCTCTTGTAATTGTGAACAGTTCTCCTTGTGCCA
GTGACAGATGTAGTGGACTCCTTTCCCAGCTGAAGCAGTGCATATGCAACAGCCATCATT
CGTGTCCTTATCTTTATTTCTCTTCGCTGTTAGAAACCAAAGTCTTCTCTGCAGGCTGGG
GGTTGACAGAGGATCTGGGTTCTCTCCTTCTGATCTTCAAAACAAGAAAGAAATGTTAAA
TATTCTGACTCTTAATTTGTTTCTCTGGGAAAGCGGAGGGGAAGGTCTCTCGGCCCCTTT
CATCCTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               49-165, + strand, RNAz p=0.834427
               

               
               430-604, - strand, RNAz p=0.855119

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-165, + strand, RNAz p=0.834427
               

               
               430-604, - strand, RNAz p=0.855119

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_025164, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025164, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               49-604, gnl|bosTau2|chr15 (13180469-13181041)
               

               
               49-604, gnl|Hg17|chr11 (116220501-116219947)
               

               
               49-604, gnl|Mm7|chr9 (46181092-46181598)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-604, gnl|bosTau2|chr15 (13180469-13181041)
               

               
               49-604, gnl|Hg17|chr11 (116220501-116219947)
               

               
               49-604, gnl|Mm7|chr9 (46181092-46181598)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	49-165, + strand, RNAz p=0.834427
	430-604, - strand, RNAz p=0.855119

	49-604, gnl\|bosTau2\|chr15 (13180469-13181041)
	49-604, gnl\|Hg17\|chr11 (116220501-116219947)
	49-604, gnl\|Mm7\|chr9 (46181092-46181598)