Non-Coding RNA Search

rjca12c_a19.y1

Sequence:


               
               CAGGTATGGAGATATAGTGAAGAAATGAAAACCATGGATCCTGGCTATCCCAAGCCAATC
ACAGTCTGGAAAGGTATCCCTGAATCTCCTCAAGGAGCCTTGGTGCACAAAGAAAATGGC
TTTACGTATTTCTACAAAGGAAAGGAGTATTGGAAATTCAACAACCAGATACTCAAGGTA
GAACCTGGATATCCCAGATCCATCCTCAAGGATTTTATGGGCTGTGATGGACCAACAGAC
AGAGATAAAGAAGGACACAGCCCACCAGACGATGTAGACATGGTCATCAAACTGGACAAC
ACAGCCAGCACTGTGAAAGCCATAGCTATGGTCATTCCCTGCATCTTGGCCTTATGCCTC
CTTGTATGGGTTTACACTGTGTTCCAGTTCAAGAGGAAAGGAACACCCCGCCACATACTG
TACTGTAAACGCTCTATGCAAGAGTGGGTGTGATGTAGGGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTATGGAGATATAGTGAAGAAATGAAAACCATGGATCCTGGCTATCCCAAGCCAATC
ACAGTCTGGAAAGGTATCCCTGAATCTCCTCAAGGAGCCTTGGTGCACAAAGAAAATGGC
TTTACGTATTTCTACAAAGGAAAGGAGTATTGGAAATTCAACAACCAGATACTCAAGGTA
GAACCTGGATATCCCAGATCCATCCTCAAGGATTTTATGGGCTGTGATGGACCAACAGAC
AGAGATAAAGAAGGACACAGCCCACCAGACGATGTAGACATGGTCATCAAACTGGACAAC
ACAGCCAGCACTGTGAAAGCCATAGCTATGGTCATTCCCTGCATCTTGGCCTTATGCCTC
CTTGTATGGGTTTACACTGTGTTCCAGTTCAAGAGGAAAGGAACACCCCGCCACATACTG
TACTGTAAACGCTCTATGCAAGAGTGGGTGTGATGTAGGGTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874396|ref|XP_604345.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874396|ref|XP_604345.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               157-316, - strand, RNAz p=0.959771
               

               
               346-463, + strand, RNAz p=0.540925
               

               
               349-463, + strand, RNAz p=0.625755

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-316, - strand, RNAz p=0.959771
               

               
               346-463, + strand, RNAz p=0.540925
               

               
               349-463, + strand, RNAz p=0.625755

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               118-463, gnl|bosTau2|chr11 (45127814-45127469)
               

               
               118-463, gnl|canFam2|chr29 (36921383-36921638)
               

               
               118-463, gnl|danRer3|chr23 (54004696-54004976)
               

               
               118-463, gnl|dasNov1|scaffold_1896 (35576-35831)
               

               
               118-463, gnl|echTel1|scaffold_295810 (10054-10309)
               

               
               118-463, gnl|fr1|chrUn (118065746-118066023)
               

               
               118-463, gnl|galGal2|chr2 (123013297-123013552)
               

               
               118-463, gnl|hg17|chr8 (89122801-89123056)
               

               
               118-463, gnl|Hg17|chr8 (89123140-89122795)
               

               
               118-463, gnl|loxAfr1|scaffold_26878 (3726-3471)
               

               
               118-463, gnl|mm7|chr4 (18043375-18043120)
               

               
               118-463, gnl|Mm7|chr4 (18043034-18043379)
               

               
               118-463, gnl|monDom2|scaffold_3 (79620505-79620250)
               

               
               118-463, gnl|oryCun1|scaffold_193698 (1641-1384)
               

               
               118-463, gnl|panTro1|chr7 (91305200-91305455)
               

               
               118-463, gnl|rheMac2|chr8 (90679404-90679659)
               

               
               118-463, gnl|rn3|chr5 (32585381-32585126)
               

               
               118-463, gnl|tetNig1|chr15_random (1501078-1500801)
               

               
               118-463, gnl|xenTro1|scaffold_492 (332604-332349)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-463, gnl|bosTau2|chr11 (45127814-45127469)
               

               
               118-463, gnl|canFam2|chr29 (36921383-36921638)
               

               
               118-463, gnl|danRer3|chr23 (54004696-54004976)
               

               
               118-463, gnl|dasNov1|scaffold_1896 (35576-35831)
               

               
               118-463, gnl|echTel1|scaffold_295810 (10054-10309)
               

               
               118-463, gnl|fr1|chrUn (118065746-118066023)
               

               
               118-463, gnl|galGal2|chr2 (123013297-123013552)
               

               
               118-463, gnl|hg17|chr8 (89122801-89123056)
               

               
               118-463, gnl|Hg17|chr8 (89123140-89122795)
               

               
               118-463, gnl|loxAfr1|scaffold_26878 (3726-3471)
               

               
               118-463, gnl|mm7|chr4 (18043375-18043120)
               

               
               118-463, gnl|Mm7|chr4 (18043034-18043379)
               

               
               118-463, gnl|monDom2|scaffold_3 (79620505-79620250)
               

               
               118-463, gnl|oryCun1|scaffold_193698 (1641-1384)
               

               
               118-463, gnl|panTro1|chr7 (91305200-91305455)
               

               
               118-463, gnl|rheMac2|chr8 (90679404-90679659)
               

               
               118-463, gnl|rn3|chr5 (32585381-32585126)
               

               
               118-463, gnl|tetNig1|chr15_random (1501078-1500801)
               

               
               118-463, gnl|xenTro1|scaffold_492 (332604-332349)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	157-316, - strand, RNAz p=0.959771
	346-463, + strand, RNAz p=0.540925
	349-463, + strand, RNAz p=0.625755

	118-463, gnl\|bosTau2\|chr11 (45127814-45127469)
	118-463, gnl\|canFam2\|chr29 (36921383-36921638)
	118-463, gnl\|danRer3\|chr23 (54004696-54004976)
	118-463, gnl\|dasNov1\|scaffold_1896 (35576-35831)
	118-463, gnl\|echTel1\|scaffold_295810 (10054-10309)
	118-463, gnl\|fr1\|chrUn (118065746-118066023)
	118-463, gnl\|galGal2\|chr2 (123013297-123013552)
	118-463, gnl\|hg17\|chr8 (89122801-89123056)
	118-463, gnl\|Hg17\|chr8 (89123140-89122795)
	118-463, gnl\|loxAfr1\|scaffold_26878 (3726-3471)
	118-463, gnl\|mm7\|chr4 (18043375-18043120)
	118-463, gnl\|Mm7\|chr4 (18043034-18043379)
	118-463, gnl\|monDom2\|scaffold_3 (79620505-79620250)
	118-463, gnl\|oryCun1\|scaffold_193698 (1641-1384)
	118-463, gnl\|panTro1\|chr7 (91305200-91305455)
	118-463, gnl\|rheMac2\|chr8 (90679404-90679659)
	118-463, gnl\|rn3\|chr5 (32585381-32585126)
	118-463, gnl\|tetNig1\|chr15_random (1501078-1500801)
	118-463, gnl\|xenTro1\|scaffold_492 (332604-332349)