Non-Coding RNA Search

rjca13c_m13.y1

Sequence:


               
               CGCCTGCCCACCGGCCGGCACGGCCGCCTGGACAGCCCTGCCTTCCGCCTCACCCTGCAC
TATCCCACGGAGCATGTGCAGTTCTGGTTGGGCAGCCCGTCCACCACCGCGGGCTGGGTA
CGCGAGGGCGACTCTGTCCAGCTCTTCTGCCGAGGGGACGGCAGCCCCACCCCCGAGTAC
ACGTTTTTCCGCCTTCAGGACCAGGAGGAAGATGTGCTGAAAACAAATCTCGAGGGGAAC
TTGACCCTGGAGGGAGTACAGCGGAGCCAGAGTGGGACCTATGGCTGCAGGGTGGAGGAC
TACGATGCCGCCGAGGACGCGGAGCTCTCCAAGACCCTGGAGCTGCACGTGGCCTACCTG
GACCCCCTGGAGCTCAGCACTGGGGAGGAGCTTTCCTTACCCCTGGGCAACAGCACAGCC
GTCAACTGCTCCGTGCGAGGCCTGCCCACCCCGACCCTGCGCTGGACCAAGGACTCGGTG
CCCCTGGGGGATGACTCCACGCTCTCTCTCCGCTCCATCACCTTTGATTCCGCCGGCACG
TACACGTGTGAGGCCTCCATGCCCACGGTCCCCCTCCTTAGCCGCACCCGGAGCTTCAAG
CTGCTGGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTGCCCACCGGCCGGCACGGCCGCCTGGACAGCCCTGCCTTCCGCCTCACCCTGCAC
TATCCCACGGAGCATGTGCAGTTCTGGTTGGGCAGCCCGTCCACCACCGCGGGCTGGGTA
CGCGAGGGCGACTCTGTCCAGCTCTTCTGCCGAGGGGACGGCAGCCCCACCCCCGAGTAC
ACGTTTTTCCGCCTTCAGGACCAGGAGGAAGATGTGCTGAAAACAAATCTCGAGGGGAAC
TTGACCCTGGAGGGAGTACAGCGGAGCCAGAGTGGGACCTATGGCTGCAGGGTGGAGGAC
TACGATGCCGCCGAGGACGCGGAGCTCTCCAAGACCCTGGAGCTGCACGTGGCCTACCTG
GACCCCCTGGAGCTCAGCACTGGGGAGGAGCTTTCCTTACCCCTGGGCAACAGCACAGCC
GTCAACTGCTCCGTGCGAGGCCTGCCCACCCCGACCCTGCGCTGGACCAAGGACTCGGTG
CCCCTGGGGGATGACTCCACGCTCTCTCTCCGCTCCATCACCTTTGATTCCGCCGGCACG
TACACGTGTGAGGCCTCCATGCCCACGGTCCCCCTCCTTAGCCGCACCCGGAGCTTCAAG
CTGCTGGTCCA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               196-355, gnl|bosTau2|chr18 (38946870-38946711)
               

               
               196-355, gnl|Hg17|chr19 (50009698-50009857)
               

               
               196-355, gnl|Mm7|chr7 (17446573-17446414)
               


               
               466-611, gnl|bosTau2|chr18 (38942937-38942792)
               

               
               466-611, gnl|canFam2|chr1 (113469011-113468574)
               

               
               466-611, gnl|hg17|chr19 (50013546-50013998)
               

               
               466-611, gnl|Hg17|chr19 (50013832-50013977)
               

               
               466-611, gnl|loxAfr1|scaffold_92300 (4856-5293)
               

               
               466-611, gnl|mm7|chr7 (17442836-17442404)
               

               
               466-611, gnl|Mm7|chr7 (17442569-17442423)
               

               
               466-611, gnl|panTro1|chr20 (47152224-47152676)
               

               
               466-611, gnl|rheMac2|chr19 (51254653-51255105)
               

               
               466-611, gnl|rn3|chr1 (79149398-79148947)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-355, gnl|bosTau2|chr18 (38946870-38946711)
               

               
               196-355, gnl|Hg17|chr19 (50009698-50009857)
               

               
               196-355, gnl|Mm7|chr7 (17446573-17446414)
               


               
               466-611, gnl|bosTau2|chr18 (38942937-38942792)
               

               
               466-611, gnl|canFam2|chr1 (113469011-113468574)
               

               
               466-611, gnl|hg17|chr19 (50013546-50013998)
               

               
               466-611, gnl|Hg17|chr19 (50013832-50013977)
               

               
               466-611, gnl|loxAfr1|scaffold_92300 (4856-5293)
               

               
               466-611, gnl|mm7|chr7 (17442836-17442404)
               

               
               466-611, gnl|Mm7|chr7 (17442569-17442423)
               

               
               466-611, gnl|panTro1|chr20 (47152224-47152676)
               

               
               466-611, gnl|rheMac2|chr19 (51254653-51255105)
               

               
               466-611, gnl|rn3|chr1 (79149398-79148947)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	196-355, gnl\|bosTau2\|chr18 (38946870-38946711)
	196-355, gnl\|Hg17\|chr19 (50009698-50009857)
	196-355, gnl\|Mm7\|chr7 (17446573-17446414)

	466-611, gnl\|bosTau2\|chr18 (38942937-38942792)
	466-611, gnl\|canFam2\|chr1 (113469011-113468574)
	466-611, gnl\|hg17\|chr19 (50013546-50013998)
	466-611, gnl\|Hg17\|chr19 (50013832-50013977)
	466-611, gnl\|loxAfr1\|scaffold_92300 (4856-5293)
	466-611, gnl\|mm7\|chr7 (17442836-17442404)
	466-611, gnl\|Mm7\|chr7 (17442569-17442423)
	466-611, gnl\|panTro1\|chr20 (47152224-47152676)
	466-611, gnl\|rheMac2\|chr19 (51254653-51255105)
	466-611, gnl\|rn3\|chr1 (79149398-79148947)