rjca14c_n15.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAAACGCCGCCGGGCGCTTCTAGTCGGGCAAAATGCAGCCGAGAACTCCGCTCGTCCT GTGCGTTCTCCTGTCCCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGGCTGCACTCC TGGATTTCAGCAAAAAGTGTTCCATATCGATCAGCCAGCTGAATTCATTGAGGACCAGGC AATTCTAAACTTGACCTTCAGTGACTGTAAGGGAAACGACAAGCTGCACTATGAGGTCTC AAGCCCATACTTCAAGGTGAACAACGATGGCAGCTTAGTCGCCCTGAGAAACGTAACTGC GGTGGGCAAGACTCTGTTCGTCCACGCCCGGACTCGCCACGCGGAAGACATGGCAGAGCT CATGATCGTCGGGGGGAAGGACATCCAGGGCTCCTCACAGGATATATTTAAATTTGCAAG AACTTCTCCTGTCCCAAGACAAAAGAGGTCCATTGTGGTATCTCCCATTTTAATTCCGGA GAATCAGAGACAGCCTTTCCCAAGAGATGTTGGCAAGGTGGTTGATAGTGACAGACCGGA AGGGTCCAAGTTCCGGCTCACCGGCAAGGGAGTGGATCAAGAGCCAAAAGGAATTTTCAG AATCAATGAGAACACGGGTAGCGTCTCCGTGACACGGAGCTTGGACAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAAACGCCGCCGGGCGCTTCTAGTCGGGCAAAATGCAGCCGAGAACTCCGCTCGTCCT GTGCGTTCTCCTGTCCCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGGCTGCACTCC TGGATTTCAGCAAAAAGTGTTCCATATCGATCAGCCAGCTGAATTCATTGAGGACCAGGC AATTCTAAACTTGACCTTCAGTGACTGTAAGGGAAACGACAAGCTGCACTATGAGGTCTC AAGCCCATACTTCAAGGTGAACAACGATGGCAGCTTAGTCGCCCTGAGAAACGTAACTGC GGTGGGCAAGACTCTGTTCGTCCACGCCCGGACTCGCCACGCGGAAGACATGGCAGAGCT CATGATCGTCGGGGGGAAGGACATCCAGGGCTCCTCACAGGATATATTTAAATTTGCAAG AACTTCTCCTGTCCCAAGACAAAAGAGGTCCATTGTGGTATCTCCCATTTTAATTCCGGA GAATCAGAGACAGCCTTTCCCAAGAGATGTTGGCAAGGTGGTTGATAGTGACAGACCGGA AGGGTCCAAGTTCCGGCTCACCGGCAAGGGAGTGGATCAAGAGCCAAAAGGAATTTTCAG AATCAATGAGAACACGGGTAGCGTCTCCGTGACACGGAGCTTGGACAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 511-649, + strand, RNAz p=0.990732 | |
| 511-602, + strand, RNAz p=0.564805 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 511-649, + strand, RNAz p=0.990732 | |
| 511-602, + strand, RNAz p=0.564805 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 192-401, gnl|bosTau2|chr18 (9924734-9924943) | |
| 192-401, gnl|canFam2|chr5 (72122679-72122341) | |
| 192-401, gnl|dasNov1|scaffold_235967 (3201-3456) | |
| 192-401, gnl|echTel1|scaffold_324177 (1134-1398) | |
| 192-401, gnl|galGal2|chr11 (16395747-16396007) | |
| 192-401, gnl|hg17|chr16 (81623068-81623333) | |
| 192-401, gnl|Hg17|chr16 (81623116-81623325) | |
| 192-401, gnl|loxAfr1|scaffold_2088 (55601-55341) | |
| 192-401, gnl|mm7|chr8 (117288560-117288828) | |
| 192-401, gnl|Mm7|chr8 (117288611-117288820) | |
| 192-401, gnl|monDom2|scaffold_1 (132152317-132152076) | |
| 192-401, gnl|oryCun1|scaffold_205536 (82373-82637) | |
| 192-401, gnl|panTro1|chr18 (76506642-76506907) | |
| 192-401, gnl|rheMac2|chr20 (81163942-81164207) | |
| 192-401, gnl|rn3|chr19 (48922220-48922486) | |
| 192-401, gnl|xenTro1|scaffold_79 (1334433-1334693) | |
| 511-649, gnl|bosTau2|chr18 (10395507-10395369) | |
| 511-649, gnl|canFam2|chr5 (71971943-71971757) | |
| 511-649, gnl|dasNov1|scaffold_98456 (9725-9913) | |
| 511-649, gnl|echTel1|scaffold_233851 (6351-6175) | |
| 511-649, gnl|hg17|chr16 (81808423-81808609) | |
| 511-649, gnl|Hg17|chr16 (81808444-81808582) | |
| 511-649, gnl|loxAfr1|scaffold_4630 (37443-37254) | |
| 511-649, gnl|mm7|chr8 (117473379-117473565) | |
| 511-649, gnl|Mm7|chr8 (117473400-117473538) | |
| 511-649, gnl|monDom2|scaffold_1 (131966856-131966670) | |
| 511-649, gnl|panTro1|chr18 (76692152-76692338) | |
| 511-649, gnl|rheMac2|chr20 (81351045-81351231) | |
| 511-649, gnl|rn3|chr19 (49175872-49176059) | |
| 511-649, gnl|xenTro1|scaffold_79 (1408714-1408894) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 192-401, gnl|bosTau2|chr18 (9924734-9924943) | |
| 192-401, gnl|canFam2|chr5 (72122679-72122341) | |
| 192-401, gnl|dasNov1|scaffold_235967 (3201-3456) | |
| 192-401, gnl|echTel1|scaffold_324177 (1134-1398) | |
| 192-401, gnl|galGal2|chr11 (16395747-16396007) | |
| 192-401, gnl|hg17|chr16 (81623068-81623333) | |
| 192-401, gnl|Hg17|chr16 (81623116-81623325) | |
| 192-401, gnl|loxAfr1|scaffold_2088 (55601-55341) | |
| 192-401, gnl|mm7|chr8 (117288560-117288828) | |
| 192-401, gnl|Mm7|chr8 (117288611-117288820) | |
| 192-401, gnl|monDom2|scaffold_1 (132152317-132152076) | |
| 192-401, gnl|oryCun1|scaffold_205536 (82373-82637) | |
| 192-401, gnl|panTro1|chr18 (76506642-76506907) | |
| 192-401, gnl|rheMac2|chr20 (81163942-81164207) | |
| 192-401, gnl|rn3|chr19 (48922220-48922486) | |
| 192-401, gnl|xenTro1|scaffold_79 (1334433-1334693) | |
| 511-649, gnl|bosTau2|chr18 (10395507-10395369) | |
| 511-649, gnl|canFam2|chr5 (71971943-71971757) | |
| 511-649, gnl|dasNov1|scaffold_98456 (9725-9913) | |
| 511-649, gnl|echTel1|scaffold_233851 (6351-6175) | |
| 511-649, gnl|hg17|chr16 (81808423-81808609) | |
| 511-649, gnl|Hg17|chr16 (81808444-81808582) | |
| 511-649, gnl|loxAfr1|scaffold_4630 (37443-37254) | |
| 511-649, gnl|mm7|chr8 (117473379-117473565) | |
| 511-649, gnl|Mm7|chr8 (117473400-117473538) | |
| 511-649, gnl|monDom2|scaffold_1 (131966856-131966670) | |
| 511-649, gnl|panTro1|chr18 (76692152-76692338) | |
| 511-649, gnl|rheMac2|chr20 (81351045-81351231) | |
| 511-649, gnl|rn3|chr19 (49175872-49176059) | |
| 511-649, gnl|xenTro1|scaffold_79 (1408714-1408894) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |