Non-Coding RNA Search

rjca15c_e8.y1

Sequence:


               
               AAACGCTTCGAGTGCGCCCAGTGTCAGAAGCGCTTCATGAGTGAGCGACCACCTCACCAA
GCATTACAAGACCCACCTGGTCACAAAGAACTTGTAAGGCCGCCTGAGGCCGGCGGCCCT
GAAGATGCAGCCCCCGCCTGCTGTGTCCCGCCTGGGCCCCTGGTGGAAAGGAGGCCCGCG
GCTGCCACGGGCCGGCCCTCAGCCCCTCCCTCGCGTTCTGCGACTGTCCCCACAGGAGGG
GGCTCTGCTGCCCCTCACCCACCTCCTCCCAAGCCCCTTGGCTCCGCCCCGGCCCTCCCC
TCTCACCACAAGCTCCCGGCCTGCCCAGCCCGTGGACCCTGGCCGTGCCCAATGAGACGT
TCTAAACCAGGACGAGTGGGAACCCTTATTTCCAAAGGAAAAACATGAATTTCACTCCGT
CGAGGAGCAAAGTGAGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGCTTCGAGTGCGCCCAGTGTCAGAAGCGCTTCATGAGTGAGCGACCACCTCACCAA
GCATTACAAGACCCACCTGGTCACAAAGAACTTGTAAGGCCGCCTGAGGCCGGCGGCCCT
GAAGATGCAGCCCCCGCCTGCTGTGTCCCGCCTGGGCCCCTGGTGGAAAGGAGGCCCGCG
GCTGCCACGGGCCGGCCCTCAGCCCCTCCCTCGCGTTCTGCGACTGTCCCCACAGGAGGG
GGCTCTGCTGCCCCTCACCCACCTCCTCCCAAGCCCCTTGGCTCCGCCCCGGCCCTCCCC
TCTCACCACAAGCTCCCGGCCTGCCCAGCCCGTGGACCCTGGCCGTGCCCAATGAGACGT
TCTAAACCAGGACGAGTGGGAACCCTTATTTCCAAAGGAAAAACATGAATTTCACTCCGT
CGAGGAGCAAAGTGAGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-276, - strand, RNAz p=0.7781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-276, - strand, RNAz p=0.7781

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               276-390, - strand, RNAmicro p=0.990537

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-390, - strand, RNAmicro p=0.990537

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-440, gnl|bosTau2|chr12 (28992510-28992930)
               

               
               1-440, gnl|Hg17|chr17 (43360094-43360527)
               

               
               1-440, gnl|Mm7|chr11 (97063604-97063188)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr12 (28992510-28992930)
               

               
               1-440, gnl|Hg17|chr17 (43360094-43360527)
               

               
               1-440, gnl|Mm7|chr11 (97063604-97063188)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-440, gnl\|bosTau2\|chr12 (28992510-28992930)
	1-440, gnl\|Hg17\|chr17 (43360094-43360527)
	1-440, gnl\|Mm7\|chr11 (97063604-97063188)