Non-Coding RNA Search

rjca15c_m24.y1

Sequence:


               
               CCCACCTCCCTGCAGCTGAACGGCACAGACACATTCAGAGAGGAGAGTCTCTCTTAACAG
ATCTCCAGTGAACTGACTCACCAGCTTCCCCAGTGCAGTGTCCTTTCAATAGCCAGATAA
AAGCCAAATGAGGAGGCTGGGAAAAGAGTGTCCAACGTAGCTGCCCTGAAAACCATCCTC
CATTTCATTCTGGAGCGGGGAGGTTACACCCAGACATCACAGAGGCTTCTCTCCCCACCG
AGGATGAACTGATAGAGTATCAGAAAACTCACAGCAACAGCAACTGGAAACAAAGGTGTT
GTCTCCAAAAGACATAGTCTTGCAAGCCCTAAAGAGCAATCAACAGAGCCATACAGATTG
TCCGCATCAGGACACTAACTTCTGGGTGAAGCATCAAATCAACTGGTTTCTTCATTCTGC
ACTTAGCAAGGCCATGGAAGATCTAGAGGAAACGTTATTTGAAGAATTTGAGAACTACTC
CTATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCTCCCTGCAGCTGAACGGCACAGACACATTCAGAGAGGAGAGTCTCTCTTAACAG
ATCTCCAGTGAACTGACTCACCAGCTTCCCCAGTGCAGTGTCCTTTCAATAGCCAGATAA
AAGCCAAATGAGGAGGCTGGGAAAAGAGTGTCCAACGTAGCTGCCCTGAAAACCATCCTC
CATTTCATTCTGGAGCGGGGAGGTTACACCCAGACATCACAGAGGCTTCTCTCCCCACCG
AGGATGAACTGATAGAGTATCAGAAAACTCACAGCAACAGCAACTGGAAACAAAGGTGTT
GTCTCCAAAAGACATAGTCTTGCAAGCCCTAAAGAGCAATCAACAGAGCCATACAGATTG
TCCGCATCAGGACACTAACTTCTGGGTGAAGCATCAAATCAACTGGTTTCTTCATTCTGC
ACTTAGCAAGGCCATGGAAGATCTAGAGGAAACGTTATTTGAAGAATTTGAGAACTACTC
CTATGCC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               86-254, gnl|bosTau2|chr2 (56322646-56322812)
               

               
               86-254, gnl|canFam2|chr37 (17775280-17775703)
               

               
               86-254, gnl|echTel1|scaffold_275997 (13570-13941)
               

               
               86-254, gnl|hg17|chr2 (206903320-206903721)
               

               
               86-254, gnl|Hg17|chr2 (206903682-206903534)
               

               
               86-254, gnl|loxAfr1|scaffold_83009 (4745-5153)
               

               
               86-254, gnl|mm7|chr1 (63450281-63450625)
               

               
               86-254, gnl|Mm7|chr1 (63450587-63450413)
               

               
               86-254, gnl|monDom2|scaffold_39 (17176649-17176186)
               

               
               86-254, gnl|oryCun1|scaffold_158145 (423-4)
               

               
               86-254, gnl|panTro1|chr13 (96936601-96937002)
               

               
               86-254, gnl|rheMac2|chr12 (70108437-70108838)
               

               
               86-254, gnl|rn3|chr9 (62013437-62013785)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-254, gnl|bosTau2|chr2 (56322646-56322812)
               

               
               86-254, gnl|canFam2|chr37 (17775280-17775703)
               

               
               86-254, gnl|echTel1|scaffold_275997 (13570-13941)
               

               
               86-254, gnl|hg17|chr2 (206903320-206903721)
               

               
               86-254, gnl|Hg17|chr2 (206903682-206903534)
               

               
               86-254, gnl|loxAfr1|scaffold_83009 (4745-5153)
               

               
               86-254, gnl|mm7|chr1 (63450281-63450625)
               

               
               86-254, gnl|Mm7|chr1 (63450587-63450413)
               

               
               86-254, gnl|monDom2|scaffold_39 (17176649-17176186)
               

               
               86-254, gnl|oryCun1|scaffold_158145 (423-4)
               

               
               86-254, gnl|panTro1|chr13 (96936601-96937002)
               

               
               86-254, gnl|rheMac2|chr12 (70108437-70108838)
               

               
               86-254, gnl|rn3|chr9 (62013437-62013785)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	86-254, gnl\|bosTau2\|chr2 (56322646-56322812)
	86-254, gnl\|canFam2\|chr37 (17775280-17775703)
	86-254, gnl\|echTel1\|scaffold_275997 (13570-13941)
	86-254, gnl\|hg17\|chr2 (206903320-206903721)
	86-254, gnl\|Hg17\|chr2 (206903682-206903534)
	86-254, gnl\|loxAfr1\|scaffold_83009 (4745-5153)
	86-254, gnl\|mm7\|chr1 (63450281-63450625)
	86-254, gnl\|Mm7\|chr1 (63450587-63450413)
	86-254, gnl\|monDom2\|scaffold_39 (17176649-17176186)
	86-254, gnl\|oryCun1\|scaffold_158145 (423-4)
	86-254, gnl\|panTro1\|chr13 (96936601-96937002)
	86-254, gnl\|rheMac2\|chr12 (70108437-70108838)
	86-254, gnl\|rn3\|chr9 (62013437-62013785)