Non-Coding RNA Search

rjca16c_j21.y1

Sequence:


               
               GCCATCCCCACTGTAGTCTCTGCAGCACATGCTGTGATGCCTGGTCTGTGTTTCTGCCAC
TGGTGTGTGTGTCGGGCTTAGTGTTTGGAGAGGGGACGCTAAGGCTTGTTTTGCTTTCCA
GGTCACTCTTTGGGGGCCCTTTTTGGGGCACCCCATCAGCCCCCAGTTCTTATAAGAACC
TTACCCCAAATTCCAGAGACTTGGTGCCCCCTAGATGTGCCCCCTTCCAGCTTTCCTATT
ATCCCCTGACCCTAAATGCCACCCTCCAGTCCTTGGAGAGGGCAGTTGTGTAAAATACAA
GAATCCCTTTTAAGAAAAGAATGCTGTCTTTGCTGTCCCCAGGCATCTCATCTGTCATCC
TTCTCTGTGACCCCTCCTGGGGTGAACCTGTCCTTGTAGGGGACCCCCAACCCTCCACCC
CAGCCTGTGTGCTCCCCAGTTCTTCTGAGTGTCTAACCAGTCTTTGCTGCAGTGTCAGCC
CGAGCTGGCCCCTGAACCACTGTGTGCCCATTTCCTAGGGAAGGGGAGGGGGGAGAAACA
GAATATTTATTACAAAGTTAGAAATATATTTATGATATTAGGGATCTCATTTGCACTTGC
CTAAGATATGCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCCCCACTGTAGTCTCTGCAGCACATGCTGTGATGCCTGGTCTGTGTTTCTGCCAC
TGGTGTGTGTGTCGGGCTTAGTGTTTGGAGAGGGGACGCTAAGGCTTGTTTTGCTTTCCA
GGTCACTCTTTGGGGGCCCTTTTTGGGGCACCCCATCAGCCCCCAGTTCTTATAAGAACC
TTACCCCAAATTCCAGAGACTTGGTGCCCCCTAGATGTGCCCCCTTCCAGCTTTCCTATT
ATCCCCTGACCCTAAATGCCACCCTCCAGTCCTTGGAGAGGGCAGTTGTGTAAAATACAA
GAATCCCTTTTAAGAAAAGAATGCTGTCTTTGCTGTCCCCAGGCATCTCATCTGTCATCC
TTCTCTGTGACCCCTCCTGGGGTGAACCTGTCCTTGTAGGGGACCCCCAACCCTCCACCC
CAGCCTGTGTGCTCCCCAGTTCTTCTGAGTGTCTAACCAGTCTTTGCTGCAGTGTCAGCC
CGAGCTGGCCCCTGAACCACTGTGTGCCCATTTCCTAGGGAAGGGGAGGGGGGAGAAACA
GAATATTTATTACAAAGTTAGAAATATATTTATGATATTAGGGATCTCATTTGCACTTGC
CTAAGATATGCAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-224, - strand, RNAz p=0.995988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-224, - strand, RNAz p=0.995988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-613, gnl|bosTau2|chr19 (38353760-38354349)
               

               
               30-613, gnl|Hg17|chr17 (39309617-39308999)
               

               
               30-613, gnl|Mm7|chr11 (102167379-102166814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-613, gnl|bosTau2|chr19 (38353760-38354349)
               

               
               30-613, gnl|Hg17|chr17 (39309617-39308999)
               

               
               30-613, gnl|Mm7|chr11 (102167379-102166814)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	30-613, gnl\|bosTau2\|chr19 (38353760-38354349)
	30-613, gnl\|Hg17\|chr17 (39309617-39308999)
	30-613, gnl\|Mm7\|chr11 (102167379-102166814)