Non-Coding RNA Search

rjca19c_e19.y1

Sequence:


               
               GACTGCAGAACGGAAAACGAAAGGAAAGGAAGAGAAATAGAAAAAGCATCACCTCCTCCT
CCTGGCTGAGAACAAAGAACCCAAATGACAATACAGACAATGGTGCCTACAACAGTCAGA
GCTTGACAGTGTAAACAGGTGATACAGGAACCTGCTTGATTTTTGCAATAATTTTCTCCT
TTTCTTTGCTTTACAAATCTTTACCTGTGAAAGGACTTCAAAAGCAGCCTACCACTTTTC
TCATTTCTTACTTTTTTTTTTTTAACTCAAAATTTGCTTGCCTAAAACACACAGACAGAA
AATAACAGCAATAACAACAACAAGAATAAGAACAACAACAACACACACAGAGTCCATTAG
GACTTGTCTATGACTTCCTATCCTTGTTAGATTTTTTTCCCCCACTCTGCTCATGACAGT
CCTTTCTCTTGCTAAGCGATTTATCTAAAGATTTTAAAGGTCATAGTTTATTATATTATT
ATCTTTAAAAATGTATGTTAAAAATATAACAAAGAATGTCCTGATGAATGAGCCAGCTGC
TGTGCAAAACCCAGAAATTGTTCCAATTTATACTTACAGGATTTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCAGAACGGAAAACGAAAGGAAAGGAAGAGAAATAGAAAAAGCATCACCTCCTCCT
CCTGGCTGAGAACAAAGAACCCAAATGACAATACAGACAATGGTGCCTACAACAGTCAGA
GCTTGACAGTGTAAACAGGTGATACAGGAACCTGCTTGATTTTTGCAATAATTTTCTCCT
TTTCTTTGCTTTACAAATCTTTACCTGTGAAAGGACTTCAAAAGCAGCCTACCACTTTTC
TCATTTCTTACTTTTTTTTTTTTAACTCAAAATTTGCTTGCCTAAAACACACAGACAGAA
AATAACAGCAATAACAACAACAAGAATAAGAACAACAACAACACACACAGAGTCCATTAG
GACTTGTCTATGACTTCCTATCCTTGTTAGATTTTTTTCCCCCACTCTGCTCATGACAGT
CCTTTCTCTTGCTAAGCGATTTATCTAAAGATTTTAAAGGTCATAGTTTATTATATTATT
ATCTTTAAAAATGTATGTTAAAAATATAACAAAGAATGTCCTGATGAATGAGCCAGCTGC
TGTGCAAAACCCAGAAATTGTTCCAATTTATACTTACAGGATTTAAAAAC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               12-311, gnl|bosTau2|chr2 (62508355-62508644)
               

               
               12-311, gnl|Hg17|chr2 (208044988-208044679)
               

               
               12-311, gnl|Mm7|chr1 (64563029-64562342)
               


               
               331-588, gnl|bosTau2|chr2 (62508634-62508899)
               

               
               331-588, gnl|canFam2|chr37 (18773778-18774567)
               

               
               331-588, gnl|echTel1|scaffold_65890 (3750-2947)
               

               
               331-588, gnl|hg17|chr2 (208043827-208044642)
               

               
               331-588, gnl|Hg17|chr2 (208044689-208044409)
               

               
               331-588, gnl|loxAfr1|scaffold_633 (120935-120177)
               

               
               331-588, gnl|mm7|chr1 (64561514-64562309)
               

               
               331-588, gnl|Mm7|chr1 (64562356-64562076)
               

               
               331-588, gnl|oryCun1|scaffold_160785 (1019-206)
               

               
               331-588, gnl|panTro1|chr13_random (26658443-26659253)
               

               
               331-588, gnl|rheMac2|chr12 (71251104-71251921)
               

               
               331-588, gnl|rn3|chr9 (63122201-63122972)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-311, gnl|bosTau2|chr2 (62508355-62508644)
               

               
               12-311, gnl|Hg17|chr2 (208044988-208044679)
               

               
               12-311, gnl|Mm7|chr1 (64563029-64562342)
               


               
               331-588, gnl|bosTau2|chr2 (62508634-62508899)
               

               
               331-588, gnl|canFam2|chr37 (18773778-18774567)
               

               
               331-588, gnl|echTel1|scaffold_65890 (3750-2947)
               

               
               331-588, gnl|hg17|chr2 (208043827-208044642)
               

               
               331-588, gnl|Hg17|chr2 (208044689-208044409)
               

               
               331-588, gnl|loxAfr1|scaffold_633 (120935-120177)
               

               
               331-588, gnl|mm7|chr1 (64561514-64562309)
               

               
               331-588, gnl|Mm7|chr1 (64562356-64562076)
               

               
               331-588, gnl|oryCun1|scaffold_160785 (1019-206)
               

               
               331-588, gnl|panTro1|chr13_random (26658443-26659253)
               

               
               331-588, gnl|rheMac2|chr12 (71251104-71251921)
               

               
               331-588, gnl|rn3|chr9 (63122201-63122972)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	12-311, gnl\|bosTau2\|chr2 (62508355-62508644)
	12-311, gnl\|Hg17\|chr2 (208044988-208044679)
	12-311, gnl\|Mm7\|chr1 (64563029-64562342)

	331-588, gnl\|bosTau2\|chr2 (62508634-62508899)
	331-588, gnl\|canFam2\|chr37 (18773778-18774567)
	331-588, gnl\|echTel1\|scaffold_65890 (3750-2947)
	331-588, gnl\|hg17\|chr2 (208043827-208044642)
	331-588, gnl\|Hg17\|chr2 (208044689-208044409)
	331-588, gnl\|loxAfr1\|scaffold_633 (120935-120177)
	331-588, gnl\|mm7\|chr1 (64561514-64562309)
	331-588, gnl\|Mm7\|chr1 (64562356-64562076)
	331-588, gnl\|oryCun1\|scaffold_160785 (1019-206)
	331-588, gnl\|panTro1\|chr13_random (26658443-26659253)
	331-588, gnl\|rheMac2\|chr12 (71251104-71251921)
	331-588, gnl\|rn3\|chr9 (63122201-63122972)