Non-Coding RNA Search

rjca20c_l8.y1

Sequence:


               
               GTATAAAGCTTACAAAGAGAGGTATGAAGTTACTGACCAGAATTGAGAGTTCTAGGAATT
TTCTTTCTGATGAAATATTTATCCTAAACCTAAGTTTGTTTTTGTTTTTTTTTTCATGCC
AGGAGCTAGATGGTTGGAAACACACTATAATTTGAGATTCTCTGCTTCTAAAATGCCAGG
TTGGATGACTAGTATCTAAGGGAAGACGTAAGAAATAATGCCTTTTGGGAGTTCCCACTG
TGGTTCAGCAGTATCTGACCAGTATCCATGAGGTCTTGAGCAGTGGGTTAAGGATCCTtg
agctgtgatgtaggtcacagatgcagcttggatctggtgtggctgtggctgtggtgtagg
ctggcagctacagctccga

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATAAAGCTTACAAAGAGAGGTATGAAGTTACTGACCAGAATTGAGAGTTCTAGGAATT
TTCTTTCTGATGAAATATTTATCCTAAACCTAAGTTTGTTTTTGTTTTTTTTTTCATGCC
AGGAGCTAGATGGTTGGAAACACACTATAATTTGAGATTCTCTGCTTCTAAAATGCCAGG
TTGGATGACTAGTATCTAAGGGAAGACGTAAGAAATAATGCCTTTTGGGAGTTCCCACTG
TGGTTCAGCAGTATCTGACCAGTATCCATGAGGTCTTGAGCAGTGGGTTAAGGATCCTtg
agctgtgatgtaggtcacagatgcagcttggatctggtgtggctgtggctgtggtgtagg
ctggcagctacagctccga

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-226, gnl|bosTau2|chr13 (8906526-8906744)
               

               
               1-226, gnl|canFam2|chr2 (4764378-4763584)
               

               
               1-226, gnl|dasNov1|scaffold_19840 (10536-11362)
               

               
               1-226, gnl|echTel1|scaffold_276397 (7752-8537)
               

               
               1-226, gnl|hg17|chr10 (35530113-35530903)
               

               
               1-226, gnl|Hg17|chr10 (35530483-35530707)
               

               
               1-226, gnl|loxAfr1|scaffold_11468 (13984-13168)
               

               
               1-226, gnl|mm7|chr18 (3442929-3442205)
               

               
               1-226, gnl|oryCun1|scaffold_205313 (21071-20436)
               

               
               1-226, gnl|panTro1|chr8 (36008988-36009778)
               

               
               1-226, gnl|rheMac2|chr9 (35418910-35419705)
               

               
               1-226, gnl|rn3|chr17 (62838030-62838738)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-226, gnl|bosTau2|chr13 (8906526-8906744)
               

               
               1-226, gnl|canFam2|chr2 (4764378-4763584)
               

               
               1-226, gnl|dasNov1|scaffold_19840 (10536-11362)
               

               
               1-226, gnl|echTel1|scaffold_276397 (7752-8537)
               

               
               1-226, gnl|hg17|chr10 (35530113-35530903)
               

               
               1-226, gnl|Hg17|chr10 (35530483-35530707)
               

               
               1-226, gnl|loxAfr1|scaffold_11468 (13984-13168)
               

               
               1-226, gnl|mm7|chr18 (3442929-3442205)
               

               
               1-226, gnl|oryCun1|scaffold_205313 (21071-20436)
               

               
               1-226, gnl|panTro1|chr8 (36008988-36009778)
               

               
               1-226, gnl|rheMac2|chr9 (35418910-35419705)
               

               
               1-226, gnl|rn3|chr17 (62838030-62838738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-226, gnl\|bosTau2\|chr13 (8906526-8906744)
	1-226, gnl\|canFam2\|chr2 (4764378-4763584)
	1-226, gnl\|dasNov1\|scaffold_19840 (10536-11362)
	1-226, gnl\|echTel1\|scaffold_276397 (7752-8537)
	1-226, gnl\|hg17\|chr10 (35530113-35530903)
	1-226, gnl\|Hg17\|chr10 (35530483-35530707)
	1-226, gnl\|loxAfr1\|scaffold_11468 (13984-13168)
	1-226, gnl\|mm7\|chr18 (3442929-3442205)
	1-226, gnl\|oryCun1\|scaffold_205313 (21071-20436)
	1-226, gnl\|panTro1\|chr8 (36008988-36009778)
	1-226, gnl\|rheMac2\|chr9 (35418910-35419705)
	1-226, gnl\|rn3\|chr17 (62838030-62838738)