Non-Coding RNA Search

rjca20c_o6.y1

Sequence:


               
               GCTCTTCAAGGAAGAAGCTGCATATCAATGATGCCTCTCACAACCATCACTCCAAAATGA
GCAAAAGTTCCAAAAGTTCAGGTGGGCTACGGACATCTCAGCACCCTCGTGAAACTGGAC
AAGAAGCCAGTGGAGACCAACGGTCCTGATGTCAATCACGAGTACAGTACAAACAGCCAG
CATATGGACTACAAAGACACATTCGACATGCTGGACTCGCTGTTAAGTGCCCAAGGAATG
AACATGTAATCATTTGTTTAGGTCAATTTTTCCTTTACTTTTTTAATTTAAAAATTGTTA
GAATGGAAAACTTCCTCCTGATCTAGCAGTGGTAACACCTGCTGTTGCTGCCACTGCTTC
AATATTTGTAAGTGCTGCTTTATTCTTCATTCTGAAAAGAAGAGATGATAGTAAACAAGT
CTTTATCTCCACATATGATAGTGTTATAAATACTGTAAAAGCATGGAAGGTGCAAAACTC
AGTATTTCTACAATTGCAGCTAAGAACATTAGGGTGAATGGCTGGCTGCTTCTAGGAATA
TAAGATGCCTCAAGCATTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTTCAAGGAAGAAGCTGCATATCAATGATGCCTCTCACAACCATCACTCCAAAATGA
GCAAAAGTTCCAAAAGTTCAGGTGGGCTACGGACATCTCAGCACCCTCGTGAAACTGGAC
AAGAAGCCAGTGGAGACCAACGGTCCTGATGTCAATCACGAGTACAGTACAAACAGCCAG
CATATGGACTACAAAGACACATTCGACATGCTGGACTCGCTGTTAAGTGCCCAAGGAATG
AACATGTAATCATTTGTTTAGGTCAATTTTTCCTTTACTTTTTTAATTTAAAAATTGTTA
GAATGGAAAACTTCCTCCTGATCTAGCAGTGGTAACACCTGCTGTTGCTGCCACTGCTTC
AATATTTGTAAGTGCTGCTTTATTCTTCATTCTGAAAAGAAGAGATGATAGTAAACAAGT
CTTTATCTCCACATATGATAGTGTTATAAATACTGTAAAAGCATGGAAGGTGCAAAACTC
AGTATTTCTACAATTGCAGCTAAGAACATTAGGGTGAATGGCTGGCTGCTTCTAGGAATA
TAAGATGCCTCAAGCATTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-217, - strand, RNAz p=0.561937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-217, - strand, RNAz p=0.561937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-321, gnl|bosTau2|chr11 (7257938-7257631)
               

               
               2-321, gnl|Hg17|chr2 (135545602-135546022)
               

               
               2-321, gnl|Mm7|chr1 (127682745-127683156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-321, gnl|bosTau2|chr11 (7257938-7257631)
               

               
               2-321, gnl|Hg17|chr2 (135545602-135546022)
               

               
               2-321, gnl|Mm7|chr1 (127682745-127683156)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	2-321, gnl\|bosTau2\|chr11 (7257938-7257631)
	2-321, gnl\|Hg17\|chr2 (135545602-135546022)
	2-321, gnl\|Mm7\|chr1 (127682745-127683156)