Non-Coding RNA Search

rjca21c_c9.y1

Sequence:


               
               TCAGTCACCTGTAGTTGATAAAAAGTTTTTGTTACTTCAAGGACTTGTAGAAAAAGAAAT
TGATTACCAAAGAGAACTACTAGAAACCTTGGGGATGATGGATATGCTTTTTGCTACCAT
GACAAGGAAAGAAAGCACTTCTGTGTTGCAGCAGACACCTGATGGATTTCTAGAGAACAA
GAGGATTGAATCATAGCGTCTGCTTAACAGGACCCATAAGAACTCCTAACTTGGAACAGA
TTTGATACATTAACTATTGTGAAGAGAATTTCTTTGATACATTCTAAAAAACTATTTACA
GAAGCATTTTTATGGAAGAGACTATGATTGAAAAATAAGAACCTGTTTTAAAACATGGAT
TTTCCATGTAATATTTTGAATTATTTCATGGCATCTTCAGCTGGAAGATCTCAGTTGTTT
TAGTCATAGTGTATTGTCCATCTTGGACAAGTTGATAATTCGTTTTAATCCAGCAGAGTT
CAGTTTCAGTGTCTGAATAGGCATCCAGAGTTCTGGAGAGGGTTTCAACTGGGAATCCTG
CCAGAGGAACAGGGCTTTATTTTTTCCTTCTATCCTGGAAAAGCAACAACAACAAGACAG
ATGGCAACACATAAATTCTTTCTTCACTCTAATCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTCACCTGTAGTTGATAAAAAGTTTTTGTTACTTCAAGGACTTGTAGAAAAAGAAAT
TGATTACCAAAGAGAACTACTAGAAACCTTGGGGATGATGGATATGCTTTTTGCTACCAT
GACAAGGAAAGAAAGCACTTCTGTGTTGCAGCAGACACCTGATGGATTTCTAGAGAACAA
GAGGATTGAATCATAGCGTCTGCTTAACAGGACCCATAAGAACTCCTAACTTGGAACAGA
TTTGATACATTAACTATTGTGAAGAGAATTTCTTTGATACATTCTAAAAAACTATTTACA
GAAGCATTTTTATGGAAGAGACTATGATTGAAAAATAAGAACCTGTTTTAAAACATGGAT
TTTCCATGTAATATTTTGAATTATTTCATGGCATCTTCAGCTGGAAGATCTCAGTTGTTT
TAGTCATAGTGTATTGTCCATCTTGGACAAGTTGATAATTCGTTTTAATCCAGCAGAGTT
CAGTTTCAGTGTCTGAATAGGCATCCAGAGTTCTGGAGAGGGTTTCAACTGGGAATCCTG
CCAGAGGAACAGGGCTTTATTTTTTCCTTCTATCCTGGAAAAGCAACAACAACAAGACAG
ATGGCAACACATAAATTCTTTCTTCACTCTAATCACTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-592, + strand, RNAz p=0.996626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-592, + strand, RNAz p=0.996626

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032175, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032175, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-595, gnl|bosTau2|chr20 (3642682-3643280)
               

               
               1-595, gnl|Hg17|chr5 (72911480-72912087)
               

               
               1-595, gnl|Mm7|chr13 (95319216-95318628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-595, gnl|bosTau2|chr20 (3642682-3643280)
               

               
               1-595, gnl|Hg17|chr5 (72911480-72912087)
               

               
               1-595, gnl|Mm7|chr13 (95319216-95318628)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-595, gnl\|bosTau2\|chr20 (3642682-3643280)
	1-595, gnl\|Hg17\|chr5 (72911480-72912087)
	1-595, gnl\|Mm7\|chr13 (95319216-95318628)