Non-Coding RNA Search

rjca22c_d4.y1

Sequence:


               
               AGGAAACATTCTTTTAGAACTCTGTCACCAACCTGGGATGTCCTCTGTGTGTGTGTGTTC
TGTCACAGTTAACCCTCTTCCTCAGCTCCACAAAAGTAACCACTACATGGATTTCAGTGG
TACTCCCTTCCTTGTATTTTCTTTCTTATTTAAAATCTTTCTTTCTTATTAAAATCTCTA
CACACTAGCTTGTAATCTTATCGTATTTAAAATTGCTTTATTAGATAGATCTTTTATGTC
TCTTTTTAATCTATAGATTCCTCCTTCTTTCTTTTCCTTAAATTTTACCTGGTCTTAGAA
ATTCCCCACTGTCTGTATTTGGTTAATGGCATACTCATGGCACAATTTAGCATGTTATTC
TATCCTCTGGATAGTGACATGGATCCAGAGGTTTGAGCAGACTCAGGTTCAGCCTTCTGC
ACAGACTGTAGGTCATGGTGTCTTCTTTCATTAGAGGGCACAGAATGTCCAATTCTCTCT
TTTGGTGACATCAGCTGAAACTGATACTCAATGCCTAGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAACATTCTTTTAGAACTCTGTCACCAACCTGGGATGTCCTCTGTGTGTGTGTGTTC
TGTCACAGTTAACCCTCTTCCTCAGCTCCACAAAAGTAACCACTACATGGATTTCAGTGG
TACTCCCTTCCTTGTATTTTCTTTCTTATTTAAAATCTTTCTTTCTTATTAAAATCTCTA
CACACTAGCTTGTAATCTTATCGTATTTAAAATTGCTTTATTAGATAGATCTTTTATGTC
TCTTTTTAATCTATAGATTCCTCCTTCTTTCTTTTCCTTAAATTTTACCTGGTCTTAGAA
ATTCCCCACTGTCTGTATTTGGTTAATGGCATACTCATGGCACAATTTAGCATGTTATTC
TATCCTCTGGATAGTGACATGGATCCAGAGGTTTGAGCAGACTCAGGTTCAGCCTTCTGC
ACAGACTGTAGGTCATGGTGTCTTCTTTCATTAGAGGGCACAGAATGTCCAATTCTCTCT
TTTGGTGACATCAGCTGAAACTGATACTCAATGCCTAGATCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-475, + strand, RNAz p=0.978078

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-475, + strand, RNAz p=0.978078

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-523, gnl|bosTau2|chr24 (19744684-19744174)
               

               
               3-523, gnl|Hg17|chr18 (27903512-27903964)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-523, gnl|bosTau2|chr24 (19744684-19744174)
               

               
               3-523, gnl|Hg17|chr18 (27903512-27903964)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	3-523, gnl\|bosTau2\|chr24 (19744684-19744174)
	3-523, gnl\|Hg17\|chr18 (27903512-27903964)