Non-Coding RNA Search

rjca30c_j17.y1

Sequence:


               
               AGTGTCTCCAGCCCTGCACTCTGGTCCCCACGTTCTCAGCAAGGGGCGGTAGGGGGATCT
CCAGGGGCAGCCTCAGGACAGTTTATTAAACAGATCCCACTCCTGTTTGGATGTGTGTGA
GGACAAGACCTCTCCTTTAGGCTTTAGTGACCAGCGGATGCCCTGGCCCCCTGCCTGGGC
GCACCATGGGGACTCTAAGGACGGGCAGCAGAGAGCCACCCCACTCTCCATCCTAGTTTT
TGACTCCTGCCTTCTCATAAGCCCCTGTCTCTGTAAATACAGCAGAGGGTCCAGTGGCCA
GTAAGAATGGGACCTCCATTCTGGAGCCTCCCTTAAGCCCTCCAGGCTGGGACTGTTCCT
CACGCTTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTCTCCAGCCCTGCACTCTGGTCCCCACGTTCTCAGCAAGGGGCGGTAGGGGGATCT
CCAGGGGCAGCCTCAGGACAGTTTATTAAACAGATCCCACTCCTGTTTGGATGTGTGTGA
GGACAAGACCTCTCCTTTAGGCTTTAGTGACCAGCGGATGCCCTGGCCCCCTGCCTGGGC
GCACCATGGGGACTCTAAGGACGGGCAGCAGAGAGCCACCCCACTCTCCATCCTAGTTTT
TGACTCCTGCCTTCTCATAAGCCCCTGTCTCTGTAAATACAGCAGAGGGTCCAGTGGCCA
GTAAGAATGGGACCTCCATTCTGGAGCCTCCCTTAAGCCCTCCAGGCTGGGACTGTTCCT
CACGCTTCCCC

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-284, gnl|bosTau2|chr10 (55664730-55665018)
               

               
               1-284, gnl|canFam2|chr8 (46224005-46224485)
               

               
               1-284, gnl|dasNov1|scaffold_42185 (5146-5547)
               

               
               1-284, gnl|echTel1|scaffold_312636 (115368-115016)
               

               
               1-284, gnl|hg17|chr14 (68889326-68889833)
               

               
               1-284, gnl|Hg17|chr14 (68889354-68889648)
               

               
               1-284, gnl|loxAfr1|scaffold_35382 (20047-19627)
               

               
               1-284, gnl|mm7|chr12 (78565236-78565627)
               

               
               1-284, gnl|oryCun1|scaffold_210208 (36119-35657)
               

               
               1-284, gnl|panTro1|chr15 (68564821-68565328)
               

               
               1-284, gnl|rheMac2|chr7 (132484439-132484888)
               

               
               1-284, gnl|rn3|chr6 (104368299-104368684)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr10 (55664730-55665018)
               

               
               1-284, gnl|canFam2|chr8 (46224005-46224485)
               

               
               1-284, gnl|dasNov1|scaffold_42185 (5146-5547)
               

               
               1-284, gnl|echTel1|scaffold_312636 (115368-115016)
               

               
               1-284, gnl|hg17|chr14 (68889326-68889833)
               

               
               1-284, gnl|Hg17|chr14 (68889354-68889648)
               

               
               1-284, gnl|loxAfr1|scaffold_35382 (20047-19627)
               

               
               1-284, gnl|mm7|chr12 (78565236-78565627)
               

               
               1-284, gnl|oryCun1|scaffold_210208 (36119-35657)
               

               
               1-284, gnl|panTro1|chr15 (68564821-68565328)
               

               
               1-284, gnl|rheMac2|chr7 (132484439-132484888)
               

               
               1-284, gnl|rn3|chr6 (104368299-104368684)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-284, gnl\|bosTau2\|chr10 (55664730-55665018)
	1-284, gnl\|canFam2\|chr8 (46224005-46224485)
	1-284, gnl\|dasNov1\|scaffold_42185 (5146-5547)
	1-284, gnl\|echTel1\|scaffold_312636 (115368-115016)
	1-284, gnl\|hg17\|chr14 (68889326-68889833)
	1-284, gnl\|Hg17\|chr14 (68889354-68889648)
	1-284, gnl\|loxAfr1\|scaffold_35382 (20047-19627)
	1-284, gnl\|mm7\|chr12 (78565236-78565627)
	1-284, gnl\|oryCun1\|scaffold_210208 (36119-35657)
	1-284, gnl\|panTro1\|chr15 (68564821-68565328)
	1-284, gnl\|rheMac2\|chr7 (132484439-132484888)
	1-284, gnl\|rn3\|chr6 (104368299-104368684)