rjca31c_k24.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATGTTCTGCACCTCAGGAGGGAATTCAGCCTCAGTGATGTCCATGAGGCCTGTCCCA GGCTCTCTATCTTCCCTGCTACATCTTCACAACAGACAGAGACAGCCTATGCCAGCCTCC ATGCCCGGGACCCTGCCCAACCCCACCATGCCAGGATCTTCCGCCGTCTTGATGCCAATG GAGAGACAAATGTCAGTGAACTCCAACCTCCTGGGAATGCAAGGTCCAAATCTCAGCAAC CCCTGTGCTTCTCCCCAAGTCCAGCCAATGCATTCAGAAGCCAAAATGAGGTTGAAGGCT GCGTTGACCCATCACCCGGCTGCCATGTCAAATGGGAATATGAACACCATGGGACACATG ATGGAAATGATGGGCTCCCGGCAGGACCAGACGCCACACCACCACATGCACTCCCACCCA CATCAGCACCAGACACTGCCAGCCCATCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATGTTCTGCACCTCAGGAGGGAATTCAGCCTCAGTGATGTCCATGAGGCCTGTCCCA GGCTCTCTATCTTCCCTGCTACATCTTCACAACAGACAGAGACAGCCTATGCCAGCCTCC ATGCCCGGGACCCTGCCCAACCCCACCATGCCAGGATCTTCCGCCGTCTTGATGCCAATG GAGAGACAAATGTCAGTGAACTCCAACCTCCTGGGAATGCAAGGTCCAAATCTCAGCAAC CCCTGTGCTTCTCCCCAAGTCCAGCCAATGCATTCAGAAGCCAAAATGAGGTTGAAGGCT GCGTTGACCCATCACCCGGCTGCCATGTCAAATGGGAATATGAACACCATGGGACACATG ATGGAAATGATGGGCTCCCGGCAGGACCAGACGCCACACCACCACATGCACTCCCACCCA CATCAGCACCAGACACTGCCAGCCCATCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 49-167, + strand, RNAz p=0.994811 | |
| 49-167, - strand, RNAz p=0.994811 | |
| 49-450, + strand, RNAz p=0.978064 | |
| 49-450, - strand, RNAz p=0.978064 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 49-167, + strand, RNAz p=0.994811 | |
| 49-167, - strand, RNAz p=0.994811 | |
| 49-450, + strand, RNAz p=0.978064 | |
| 49-450, - strand, RNAz p=0.978064 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 49-177, gnl|bosTau2|chr4 (38258973-38259101) | |
| 49-177, gnl|canFam2|chr14 (44744842-44745005) | |
| 49-177, gnl|dasNov1|scaffold_17 (250342-250510) | |
| 49-177, gnl|fr1|chrUn (24418663-24418822) | |
| 49-177, gnl|galGal2|chr2 (32565893-32566063) | |
| 49-177, gnl|hg17|chr7 (28531585-28531757) | |
| 49-177, gnl|Hg17|chr7 (28531608-28531736) | |
| 49-177, gnl|loxAfr1|scaffold_27764 (17326-17493) | |
| 49-177, gnl|mm7|chr6 (53567809-53567987) | |
| 49-177, gnl|Mm7|chr6 (53567830-53567958) | |
| 49-177, gnl|monDom2|scaffold_7 (91466806-91466631) | |
| 49-177, gnl|oryCun1|scaffold_198116 (153912-154080) | |
| 49-177, gnl|panTro1|chr6 (29664714-29664886) | |
| 49-177, gnl|rheMac2|chr3 (97484047-97483878) | |
| 49-177, gnl|rn3|chr4 (82228300-82228479) | |
| 49-177, gnl|tetNig1|chr8 (6565637-6565485) | |
| 49-177, gnl|xenTro1|scaffold_29 (2788583-2788774) | |
| 288-450, gnl|bosTau2|chr4 (38347677-38347839) | |
| 288-450, gnl|canFam2|chr14 (44827370-44827495) | |
| 288-450, gnl|danRer3|chr19 (21431683-21431563) | |
| 288-450, gnl|echTel1|scaffold_305059 (949-1074) | |
| 288-450, gnl|fr1|chrUn (103574661-103574534) | |
| 288-450, gnl|galGal2|chr2 (32623910-32624034) | |
| 288-450, gnl|hg17|chr7 (28617035-28617161) | |
| 288-450, gnl|Hg17|chr7 (28617055-28617217) | |
| 288-450, gnl|mm7|chr6 (53644286-53644411) | |
| 288-450, gnl|Mm7|chr6 (53644305-53644467) | |
| 288-450, gnl|monDom2|scaffold_7 (91375035-91374911) | |
| 288-450, gnl|panTro1|chr6 (29750218-29750344) | |
| 288-450, gnl|rn3|chr4 (82303332-82303457) | |
| 288-450, gnl|tetNig1|chr8 (6553692-6553567) | |
| 288-450, gnl|xenTro1|scaffold_29 (2838334-2838458) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-177, gnl|bosTau2|chr4 (38258973-38259101) | |
| 49-177, gnl|canFam2|chr14 (44744842-44745005) | |
| 49-177, gnl|dasNov1|scaffold_17 (250342-250510) | |
| 49-177, gnl|fr1|chrUn (24418663-24418822) | |
| 49-177, gnl|galGal2|chr2 (32565893-32566063) | |
| 49-177, gnl|hg17|chr7 (28531585-28531757) | |
| 49-177, gnl|Hg17|chr7 (28531608-28531736) | |
| 49-177, gnl|loxAfr1|scaffold_27764 (17326-17493) | |
| 49-177, gnl|mm7|chr6 (53567809-53567987) | |
| 49-177, gnl|Mm7|chr6 (53567830-53567958) | |
| 49-177, gnl|monDom2|scaffold_7 (91466806-91466631) | |
| 49-177, gnl|oryCun1|scaffold_198116 (153912-154080) | |
| 49-177, gnl|panTro1|chr6 (29664714-29664886) | |
| 49-177, gnl|rheMac2|chr3 (97484047-97483878) | |
| 49-177, gnl|rn3|chr4 (82228300-82228479) | |
| 49-177, gnl|tetNig1|chr8 (6565637-6565485) | |
| 49-177, gnl|xenTro1|scaffold_29 (2788583-2788774) | |
| 288-450, gnl|bosTau2|chr4 (38347677-38347839) | |
| 288-450, gnl|canFam2|chr14 (44827370-44827495) | |
| 288-450, gnl|danRer3|chr19 (21431683-21431563) | |
| 288-450, gnl|echTel1|scaffold_305059 (949-1074) | |
| 288-450, gnl|fr1|chrUn (103574661-103574534) | |
| 288-450, gnl|galGal2|chr2 (32623910-32624034) | |
| 288-450, gnl|hg17|chr7 (28617035-28617161) | |
| 288-450, gnl|Hg17|chr7 (28617055-28617217) | |
| 288-450, gnl|mm7|chr6 (53644286-53644411) | |
| 288-450, gnl|Mm7|chr6 (53644305-53644467) | |
| 288-450, gnl|monDom2|scaffold_7 (91375035-91374911) | |
| 288-450, gnl|panTro1|chr6 (29750218-29750344) | |
| 288-450, gnl|rn3|chr4 (82303332-82303457) | |
| 288-450, gnl|tetNig1|chr8 (6553692-6553567) | |
| 288-450, gnl|xenTro1|scaffold_29 (2838334-2838458) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |