Non-Coding RNA Search

rjca33c_l15.y1

Sequence:


               
               CAAAGTCAGATGGAACTGGTTGGAGGGATAGAAGGAGAATGAGTAGCTTGGATACTTTAA
GAACTTTAAGGCTGAGTGATTTCCAGTGATTCTCCACTTCAACAGGTAGAGAAGTAAGGT
AACAAAAAATAATGTTGTCTGTagttcccatcgtggctcagtggttaacgaatctgacta
tgaaccatgaggttgcgggtttgatccctggccttgctcagtgggttaaggatccagcgt
tgccatgagctgtggtgtaggtcgcagatgtggctgggatcctacgttgctgtggctgtg
gtgtaggccggcggctgcagctccaattcgacccctagcctgggaacctccatatgcctt
ggcagtggcccaagaaatagcaaaaagacCAAAAAAAAAAAAAAAAATCGTTCCAATTCT
ACCCCTATTGTTTTTGGGTTATTCCCCTGCCCCCAGAATCTCTTTATACATACATGCTTT
CTGTTTGGGATAGTGTACACAAAGTGGCAAGTACTGCTAGGAACATACTGGCCCCCAGCT
TCCAGATAGAACTGGGAAAACCTCAGCTCAGAAGGCAAGCAATGCCCACAGTCAGCCCAC
AGATACAACTGCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTCAGATGGAACTGGTTGGAGGGATAGAAGGAGAATGAGTAGCTTGGATACTTTAA
GAACTTTAAGGCTGAGTGATTTCCAGTGATTCTCCACTTCAACAGGTAGAGAAGTAAGGT
AACAAAAAATAATGTTGTCTGTagttcccatcgtggctcagtggttaacgaatctgacta
tgaaccatgaggttgcgggtttgatccctggccttgctcagtgggttaaggatccagcgt
tgccatgagctgtggtgtaggtcgcagatgtggctgggatcctacgttgctgtggctgtg
gtgtaggccggcggctgcagctccaattcgacccctagcctgggaacctccatatgcctt
ggcagtggcccaagaaatagcaaaaagacCAAAAAAAAAAAAAAAAATCGTTCCAATTCT
ACCCCTATTGTTTTTGGGTTATTCCCCTGCCCCCAGAATCTCTTTATACATACATGCTTT
CTGTTTGGGATAGTGTACACAAAGTGGCAAGTACTGCTAGGAACATACTGGCCCCCAGCT
TCCAGATAGAACTGGGAAAACCTCAGCTCAGAAGGCAAGCAATGCCCACAGTCAGCCCAC
AGATACAACTGCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               465-608, + strand, RNAz p=0.908528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-608, + strand, RNAz p=0.908528

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               425-608, gnl|bosTau2|chr3 (8276247-8276059)
               

               
               425-608, gnl|canFam2|chr7 (46037559-46037246)
               

               
               425-608, gnl|dasNov1|scaffold_142379 (2042-2318)
               

               
               425-608, gnl|echTel1|scaffold_162342 (825-548)
               

               
               425-608, gnl|hg17|chr1 (150945786-150946077)
               

               
               425-608, gnl|Hg17|chr1 (150946049-150945865)
               

               
               425-608, gnl|oryCun1|scaffold_185176 (19021-19282)
               

               
               425-608, gnl|panTro1|chr1_random (24471322-24471613)
               

               
               425-608, gnl|rheMac2|chr1 (132677467-132677758)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               425-608, gnl|bosTau2|chr3 (8276247-8276059)
               

               
               425-608, gnl|canFam2|chr7 (46037559-46037246)
               

               
               425-608, gnl|dasNov1|scaffold_142379 (2042-2318)
               

               
               425-608, gnl|echTel1|scaffold_162342 (825-548)
               

               
               425-608, gnl|hg17|chr1 (150945786-150946077)
               

               
               425-608, gnl|Hg17|chr1 (150946049-150945865)
               

               
               425-608, gnl|oryCun1|scaffold_185176 (19021-19282)
               

               
               425-608, gnl|panTro1|chr1_random (24471322-24471613)
               

               
               425-608, gnl|rheMac2|chr1 (132677467-132677758)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	425-608, gnl\|bosTau2\|chr3 (8276247-8276059)
	425-608, gnl\|canFam2\|chr7 (46037559-46037246)
	425-608, gnl\|dasNov1\|scaffold_142379 (2042-2318)
	425-608, gnl\|echTel1\|scaffold_162342 (825-548)
	425-608, gnl\|hg17\|chr1 (150945786-150946077)
	425-608, gnl\|Hg17\|chr1 (150946049-150945865)
	425-608, gnl\|oryCun1\|scaffold_185176 (19021-19282)
	425-608, gnl\|panTro1\|chr1_random (24471322-24471613)
	425-608, gnl\|rheMac2\|chr1 (132677467-132677758)