Non-Coding RNA Search

rjca34c_e8.y1

Sequence:


               
               AGAGAGAGAGCGAGCCTCCGCGCCATGGCCCGGCGCCCGCCCTAGCTCCGTGCACAGATG
CCACGGCGTAGCCGGCGGGGCATCTGGCGGATCCCCGTGGATGAGATTGACCGGCCGGGC
AGCTTCGCCTGGCACATGAACCGCTCCATTGTGCTGCTGCTCAAGGTGCTGGCCCAGCTC
CGGGACCATAGCACCCTGCTGAAGGTGTCCTCTATGCTGCAGCGGACCCCAGACCAGGGC
AAGAAGTATCTGCGAGATGCTGACCGCCAGGTCCTGGCACAGCGGGCCTTCATCCTCACA
GTGAAGGTTCTGGAGGACACACTGAGCGAGCTTGCGGAGGGGTCAGAACGCCCAGGGCCC
AAGGCCTGTGGCCTCTCCGGAGCCAGGATGACCACTGACGTCTCCCACAAGGCCAGTCCT
GAGGATGGACAGGAGGGCCTCCCCCACCCCAAGAAGCCCCCTCTGGCAGATGGCTCAGGG
CCGGGGACCGAGCCCGGGGGCAAATCAGGCCCCCTCACCCACCGGCCTGTGGCTATGGAT
GCAGGAGAGGGCACAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAGAGAGCGAGCCTCCGCGCCATGGCCCGGCGCCCGCCCTAGCTCCGTGCACAGATG
CCACGGCGTAGCCGGCGGGGCATCTGGCGGATCCCCGTGGATGAGATTGACCGGCCGGGC
AGCTTCGCCTGGCACATGAACCGCTCCATTGTGCTGCTGCTCAAGGTGCTGGCCCAGCTC
CGGGACCATAGCACCCTGCTGAAGGTGTCCTCTATGCTGCAGCGGACCCCAGACCAGGGC
AAGAAGTATCTGCGAGATGCTGACCGCCAGGTCCTGGCACAGCGGGCCTTCATCCTCACA
GTGAAGGTTCTGGAGGACACACTGAGCGAGCTTGCGGAGGGGTCAGAACGCCCAGGGCCC
AAGGCCTGTGGCCTCTCCGGAGCCAGGATGACCACTGACGTCTCCCACAAGGCCAGTCCT
GAGGATGGACAGGAGGGCCTCCCCCACCCCAAGAAGCCCCCTCTGGCAGATGGCTCAGGG
CCGGGGACCGAGCCCGGGGGCAAATCAGGCCCCCTCACCCACCGGCCTGTGGCTATGGAT
GCAGGAGAGGGCACAGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47199066|emb|CAF89127.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47199066|emb|CAF89127.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               414-558, - strand, RNAz p=0.974214

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-558, - strand, RNAz p=0.974214

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               78-243, gnl|bosTau2|chr17 (44679114-44679279)
               

               
               78-243, gnl|canFam2|chr26 (31445342-31445136)
               

               
               78-243, gnl|danRer3|chrUn (16702367-16702168)
               

               
               78-243, gnl|fr1|chrUn (60501194-60501369)
               

               
               78-243, gnl|galGal2|chr15 (8126298-8126484)
               

               
               78-243, gnl|hg17|chr22 (22884891-22885096)
               

               
               78-243, gnl|Hg17|chr22 (22884921-22885086)
               

               
               78-243, gnl|loxAfr1|scaffold_12069 (11419-11217)
               

               
               78-243, gnl|mm7|chr10 (75314483-75314277)
               

               
               78-243, gnl|Mm7|chr10 (75314449-75314284)
               

               
               78-243, gnl|oryCun1|scaffold_124606 (2307-2511)
               

               
               78-243, gnl|panTro1|chr23 (22936572-22936777)
               

               
               78-243, gnl|rn3|chr20 (13457697-13457488)
               

               
               78-243, gnl|tetNig1|chr12 (11951357-11951533)
               

               
               78-243, gnl|xenTro1|scaffold_169 (953119-952940)
               


               
               335-558, gnl|bosTau2|chr17 (44680035-44680258)
               

               
               335-558, gnl|Hg17|chr22 (22887156-22887379)
               

               
               335-558, gnl|Mm7|chr10 (75313108-75312885)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-243, gnl|bosTau2|chr17 (44679114-44679279)
               

               
               78-243, gnl|canFam2|chr26 (31445342-31445136)
               

               
               78-243, gnl|danRer3|chrUn (16702367-16702168)
               

               
               78-243, gnl|fr1|chrUn (60501194-60501369)
               

               
               78-243, gnl|galGal2|chr15 (8126298-8126484)
               

               
               78-243, gnl|hg17|chr22 (22884891-22885096)
               

               
               78-243, gnl|Hg17|chr22 (22884921-22885086)
               

               
               78-243, gnl|loxAfr1|scaffold_12069 (11419-11217)
               

               
               78-243, gnl|mm7|chr10 (75314483-75314277)
               

               
               78-243, gnl|Mm7|chr10 (75314449-75314284)
               

               
               78-243, gnl|oryCun1|scaffold_124606 (2307-2511)
               

               
               78-243, gnl|panTro1|chr23 (22936572-22936777)
               

               
               78-243, gnl|rn3|chr20 (13457697-13457488)
               

               
               78-243, gnl|tetNig1|chr12 (11951357-11951533)
               

               
               78-243, gnl|xenTro1|scaffold_169 (953119-952940)
               


               
               335-558, gnl|bosTau2|chr17 (44680035-44680258)
               

               
               335-558, gnl|Hg17|chr22 (22887156-22887379)
               

               
               335-558, gnl|Mm7|chr10 (75313108-75312885)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	78-243, gnl\|bosTau2\|chr17 (44679114-44679279)
	78-243, gnl\|canFam2\|chr26 (31445342-31445136)
	78-243, gnl\|danRer3\|chrUn (16702367-16702168)
	78-243, gnl\|fr1\|chrUn (60501194-60501369)
	78-243, gnl\|galGal2\|chr15 (8126298-8126484)
	78-243, gnl\|hg17\|chr22 (22884891-22885096)
	78-243, gnl\|Hg17\|chr22 (22884921-22885086)
	78-243, gnl\|loxAfr1\|scaffold_12069 (11419-11217)
	78-243, gnl\|mm7\|chr10 (75314483-75314277)
	78-243, gnl\|Mm7\|chr10 (75314449-75314284)
	78-243, gnl\|oryCun1\|scaffold_124606 (2307-2511)
	78-243, gnl\|panTro1\|chr23 (22936572-22936777)
	78-243, gnl\|rn3\|chr20 (13457697-13457488)
	78-243, gnl\|tetNig1\|chr12 (11951357-11951533)
	78-243, gnl\|xenTro1\|scaffold_169 (953119-952940)

	335-558, gnl\|bosTau2\|chr17 (44680035-44680258)
	335-558, gnl\|Hg17\|chr22 (22887156-22887379)
	335-558, gnl\|Mm7\|chr10 (75313108-75312885)