Non-Coding RNA Search

rjca34c_f4.y1

Sequence:


               
               GGATTAGAGAATAGGCAGGGTTGATTTATTACTAGCATGTCATTTGTATGTAAACTACTG
GAAAATAGCAGTTTTAAGAGTTTTCTATTTCAGTTTTGTTTACACTCCTAATTGCTTTAA
GCACTTTTTTGTGTGTAAAGTCTGGCCCAGCCCTTGTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTAGAGAATAGGCAGGGTTGATTTATTACTAGCATGTCATTTGTATGTAAACTACTG
GAAAATAGCAGTTTTAAGAGTTTTCTATTTCAGTTTTGTTTACACTCCTAATTGCTTTAA
GCACTTTTTTGTGTGTAAAGTCTGGCCCAGCCCTTGTGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-176, gnl|bosTau2|chr16 (53967350-53967172)
               

               
               1-176, gnl|canFam2|chr7 (8541014-8540573)
               

               
               1-176, gnl|dasNov1|scaffold_42868 (3071-2684)
               

               
               1-176, gnl|echTel1|scaffold_318855 (4436-4010)
               

               
               1-176, gnl|hg17|chr1 (193858486-193858927)
               

               
               1-176, gnl|Hg17|chr1 (193858826-193858645)
               

               
               1-176, gnl|loxAfr1|scaffold_11694 (42539-42117)
               

               
               1-176, gnl|mm7|chr1 (139332300-139331844)
               

               
               1-176, gnl|Mm7|chr1 (139331942-139332155)
               

               
               1-176, gnl|monDom2|scaffold_16 (56396426-56396806)
               

               
               1-176, gnl|oryCun1|scaffold_178333 (43469-43915)
               

               
               1-176, gnl|panTro1|chr1 (176507308-176507747)
               

               
               1-176, gnl|rheMac2|chr1 (173383981-173383542)
               

               
               1-176, gnl|rn3|chr13 (52818490-52818051)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-176, gnl|bosTau2|chr16 (53967350-53967172)
               

               
               1-176, gnl|canFam2|chr7 (8541014-8540573)
               

               
               1-176, gnl|dasNov1|scaffold_42868 (3071-2684)
               

               
               1-176, gnl|echTel1|scaffold_318855 (4436-4010)
               

               
               1-176, gnl|hg17|chr1 (193858486-193858927)
               

               
               1-176, gnl|Hg17|chr1 (193858826-193858645)
               

               
               1-176, gnl|loxAfr1|scaffold_11694 (42539-42117)
               

               
               1-176, gnl|mm7|chr1 (139332300-139331844)
               

               
               1-176, gnl|Mm7|chr1 (139331942-139332155)
               

               
               1-176, gnl|monDom2|scaffold_16 (56396426-56396806)
               

               
               1-176, gnl|oryCun1|scaffold_178333 (43469-43915)
               

               
               1-176, gnl|panTro1|chr1 (176507308-176507747)
               

               
               1-176, gnl|rheMac2|chr1 (173383981-173383542)
               

               
               1-176, gnl|rn3|chr13 (52818490-52818051)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-176, gnl\|bosTau2\|chr16 (53967350-53967172)
	1-176, gnl\|canFam2\|chr7 (8541014-8540573)
	1-176, gnl\|dasNov1\|scaffold_42868 (3071-2684)
	1-176, gnl\|echTel1\|scaffold_318855 (4436-4010)
	1-176, gnl\|hg17\|chr1 (193858486-193858927)
	1-176, gnl\|Hg17\|chr1 (193858826-193858645)
	1-176, gnl\|loxAfr1\|scaffold_11694 (42539-42117)
	1-176, gnl\|mm7\|chr1 (139332300-139331844)
	1-176, gnl\|Mm7\|chr1 (139331942-139332155)
	1-176, gnl\|monDom2\|scaffold_16 (56396426-56396806)
	1-176, gnl\|oryCun1\|scaffold_178333 (43469-43915)
	1-176, gnl\|panTro1\|chr1 (176507308-176507747)
	1-176, gnl\|rheMac2\|chr1 (173383981-173383542)
	1-176, gnl\|rn3\|chr13 (52818490-52818051)